Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2027 ATGGGTAAAGCACCTTGTTGTGAGAAACATGGTGTGAAAAGAGGAGCTTGGACTCCTGAAGAAGATCAAGCTTTAGTTGACTACATCAACAAACATGGCCATGGAAGTTGGCGTACCCTTCCTAAACATGCAGGTCTCCTAAGATGCGGAAAAAGTTGCCGGCTTCGGTGGATAAACTATCTTCGTCCTGGCATCAAGCGTGGCTCATTTACTAATGAAGAAGAAACTACTATGATTCAACTTCATGCCACACTTGGCAACAGGTGGGCTGCTATTGCAGCTCAACTACCAGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATTTAAAGAAACGCGTCGTTCAGTCACTAGGGGAAAAACATCCATGTCTCATTCCTGATAGGAGTGTTCAGTCTGATTCTCCTTCTACGCGCCACATGGCCCAGTGGGAAAGTGCAAGGGTTGAAGCAGAGAAGAGGCTGTCATCGGAGTCCACATTGCTTAATTCAGTCTCTACAACTGAAACATACCCTGATTACTTTCTTCAACTTTGGCATTCTGATGTTGGACGGAGATTCCGTGAGATCAAGGGAAAGGAAGGAGTAGTGTCTCAAAGCATTGTCTCACAAGCATCGTCATCATTGCTATCATCATCGAAATTGGAGGAGTCATGTTCAGATGTCTCATTGCAGGTGAAAAACAACGAAACACAGAGCCTGAAAATGAAAACACCAAAGCTTGAAGGCGTCGACATGATTGAGGAACAGAAATCAAGTAGCTACAAACCAAAGCTTGAATATGATAGAGCTGGTTCAGATTCAGGCATTTATGAATTTCTTGATACTTCTGATTCTGTTTTGAAGCACCTACTACATATGCCTGATGATGATATAGCATTCTTGGGACATACCGACAATTTCTTGAATCTCCTTGATGGTAGATCCGACTGA 939 0.4313 MGKAPCCEKHGVKRGAWTPEEDQALVDYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGSFTNEEETTMIQLHATLGNRWAAIAAQLPGRTDNEIKNYWNTHLKKRVVQSLGEKHPCLIPDRSVQSDSPSTRHMAQWESARVEAEKRLSSESTLLNSVSTTETYPDYFLQLWHSDVGRRFREIKGKEGVVSQSIVSQASSSLLSSSKLEESCSDVSLQVKNNETQSLKMKTPKLEGVDMIEEQKSSSYKPKLEYDRAGSDSGIYEFLDTSDSVLKHLLHMPDDDIAFLGHTDNFLNLLDGRSD* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2027 312 CDD SANT 69 112 IPR001005 -
Mal1g2027 312 CDD SANT 16 61 IPR001005 -
Mal1g2027 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 300 - -
Mal1g2027 312 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal1g2027 312 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mal1g2027 312 Gene3D - 14 66 - -
Mal1g2027 312 Gene3D - 69 116 - -
Mal1g2027 312 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal1g2027 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mal1g2027 312 SMART sant 66 114 IPR001005 -
Mal1g2027 312 SMART sant 13 63 IPR001005 -
Mal1g2027 312 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 300 - -
Mal1g2027 312 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mal1g2027 312 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal1g2027 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2027 Mal-Chr1 26608807 26611205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2027 1 297 MYB Transcription Factor Family AT3G61250 50.968 5.99e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal1g2027 Myb_DNA-binding 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2027 K09422 - gmx:100782075 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2027 1 26608807 26611205 Mal1g2027 1 26608807 26611205 ECH