Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2019 ATGAAGATCCACCAAAAAGACGGCTCTTCCTCTTCTAGAGTTGGCTATGATGCATTGGAGTATCTTAAGGCAGTAAAATTTACATTTCAATATAATAGGATAAAGTTTGATCAGATTTTAAATCTCATAAAGCTTCTCCAGGCTGGAAGAATTTATATTTATACAAATCCTAGAAAGTATGATGAGTATTTAAACTGCGTCAAAGCAAGAGTGAAGAAGCTGCTTAAAGGGCATACACATTTAATTTTGGGATTCAACATCTTCCTGCCAAAGGAACATCAATTCACACTTTCATTAGGATTATTAGGGTTTCAAGATCCATTAGCGTTTCGTAAGGCAGTCAAAGTCGCGCTTCAAGAGAAGAGGGAAAATTATTATAATGACTTTTTAAAAGTCATAAAAGATTTTGAGGATCAAAGAATTGATTTAAGAGGCGTCGAGGCAAGAGTCAAGGAGCTGCTTAAAGGGCATACAGATTTAATTTTGGGATTCAACATCTTCCTGCACAAGGAACATCTTCAGACGACTGATGAAGATCCACCAAAAAGACGGCTCTTCCTCTTCTAG 567 0.3651 MKIHQKDGSSSSRVGYDALEYLKAVKFTFQYNRIKFDQILNLIKLLQAGRIYIYTNPRKYDEYLNCVKARVKKLLKGHTHLILGFNIFLPKEHQFTLSLGLLGFQDPLAFRKAVKVALQEKRENYYNDFLKVIKDFEDQRIDLRGVEARVKELLKGHTDLILGFNIFLHKEHLQTTDEDPPKRRLFLF* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2019 188 ProSiteProfiles PAH domain profile. 100 171 IPR003822 GO:0006355
Mal1g2019 188 PANTHER SIN3B-RELATED 14 55 IPR039774 GO:0003714
Mal1g2019 188 PANTHER SIN3B-RELATED 104 178 IPR039774 GO:0003714
Mal1g2019 188 PANTHER SIN3B-RELATED 66 127 IPR039774 GO:0003714
Mal1g2019 188 PANTHER PROTEIN, PUTATIVE-RELATED 66 127 - -
Mal1g2019 188 Pfam Paired amphipathic helix repeat 126 168 IPR003822 GO:0006355
Mal1g2019 188 Pfam Paired amphipathic helix repeat 37 89 IPR003822 GO:0006355
Mal1g2019 188 ProSiteProfiles PAH domain profile. 10 92 IPR003822 GO:0006355
Mal1g2019 188 SUPERFAMILY PAH2 domain 16 92 IPR036600 GO:0006355
Mal1g2019 188 SUPERFAMILY PAH2 domain 103 170 IPR036600 GO:0006355
Mal1g2019 188 PANTHER PROTEIN, PUTATIVE-RELATED 14 55 - -
Mal1g2019 188 PANTHER PROTEIN, PUTATIVE-RELATED 104 178 - -
Mal1g2019 188 Gene3D Paired amphipathic helix 106 168 IPR036600 GO:0006355
Mal1g2019 188 Gene3D Paired amphipathic helix 17 90 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2019 Mal-Chr1 26532459 26535640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2019 17 97 WRKY Transcription Factor Family AT4G12020 38.272 1.31e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal1g2019 PAH 6.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2019 K11644 - cam:101488742 122.479