Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2016 ATGGTTAACTCCAATTTGAGTCCCATTTTCATCTTCCTTCTCCTTGTTTGTAACCATCACTATAGTGCAGAGGCACAATCAACCTCTCCTTTCAACTCACCAACAACTGTATGGGATGTATCTTCTGTTGGTGTTATCATTGGAGCCGTAATAGCCACACTTATCTTAATTTTCCTCTTCTCATTGTTCATACACCGTTGCACAAACTCACAAAACAATGTCTCATCAAAGTGTCAAAGTGGCATTGGTATCAACCCTCAACTTCTAAAAACTTTCCCAATTTTACTTTACTCTTTCATAATCAACAATCTTAAGAAAGGTGATGAAGGTCCTCTACAATGTGCTGTGTGTCTCACTGACTTCAACAACAATGATAAACTTCGTGTGTTACCTCAATGTAACCATGTATTTCATCCTCCATGTATTGATGCTTGGCTTTCTAAGCATGTTACTTGTCCTGTTTGTCGTACAAATCTCAATCATCAATGTTCATTACATTTTTCCATTTCCATCGACACACAAAACAACGGTGGATGTGGAGGAAGTGAAAGGATATAA 558 0.3781 MVNSNLSPIFIFLLLVCNHHYSAEAQSTSPFNSPTTVWDVSSVGVIIGAVIATLILIFLFSLFIHRCTNSQNNVSSKCQSGIGINPQLLKTFPILLYSFIINNLKKGDEGPLQCAVCLTDFNNNDKLRVLPQCNHVFHPPCIDAWLSKHVTCPVCRTNLNHQCSLHFSISIDTQNNGGCGGSERI* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2016 185 SMART ring_2 114 155 IPR001841 -
Mal1g2016 185 PANTHER RING FINGER DOMAIN-CONTAINING 6 176 - -
Mal1g2016 185 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 176 - -
Mal1g2016 185 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Mal1g2016 185 Pfam Ring finger domain 113 156 IPR001841 -
Mal1g2016 185 SUPERFAMILY RING/U-box 113 162 - -
Mal1g2016 185 CDD RING-H2_PA-TM-RING 113 156 - -
Mal1g2016 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 162 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2016 Mal-Chr1 26508012 26508569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2016 1 170 Rapid Response to Elicitors AT3G05200 34.807 2.85e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2016 K10664 - aprc:113871817 139.043