Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2009 ATGGCTCCGTCGGCGGAACATAACGGCGAGTCTCAGAGATCCATTCCGACGCCGTTTCTCACCAAAACGTACCACATCGTTGATGAAATCACCACCGACGATGTGATTTCGTGGAACGATACTGGTACATCCTTCATCGTTTGGAACCCTACCGTTTTCGCCAGAGATTTGCTTCCTAAATATTTCAAACACAACAATTTCTCTAGCTTCGTTCGCCAACTCAATACTTATGGATTTAAAAAAGTTGTACCTGATCGGTGGGAATTCTCTAACGACTGTTTCCGAAGAGGCGAGGAACGGCTTCTCCGTGATATTCAGCGACGAAAAATCGTTTCAGCATCGTCGGCGGTGGCTTCCAATGCCGGTACAACTGCGATCCCGACTGCAAAGTCGATTGTGTCGCCATCAAATTCGGGAGAGGAGCAGGTGATTTCTTCGAATTCGTCGCCGTCGATTGCGCCGGCGGCGTTATTAGAGGAGAACGAGAGGCTGAGAAAGGAGAACATGCAGTTAAAGAAGGAATTAGTAGAAATGAAATCGCTCTGCAATAATATATACAATCTTATGTCGAATTACGCAAAATTTCAAACGGAATGCAGTCCGGAAGGAAAAGAGTGTTGCTCAACGGCGACACCGACGCCGGCGAAGACGGTTTGTTTGTTTCCGGAGAAGCGGTGCGACGGCGAAGATGTAGCGGTGATTGAAGATAGGAACCCGAAGCTGTTTGGGATAACGATTGATGCGAAGCGAGCGAAAGGAGAAGGACGATGTTTGGAGGATGATGTGGTGTTGAGTTTGAATCAACCAGTTCATGTGGACGTGAAATCAGAGCCGTTTGATTCAAGGAAGGGTGAAAAGAGGAAAATGATGCGGTTAAATCAGTGTTATAGAACGAATCAAAGTGTGTGTAATTGA 915 0.4667 MAPSAEHNGESQRSIPTPFLTKTYHIVDEITTDDVISWNDTGTSFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEERLLRDIQRRKIVSASSAVASNAGTTAIPTAKSIVSPSNSGEEQVISSNSSPSIAPAALLEENERLRKENMQLKKELVEMKSLCNNIYNLMSNYAKFQTECSPEGKECCSTATPTPAKTVCLFPEKRCDGEDVAVIEDRNPKLFGITIDAKRAKGEGRCLEDDVVLSLNQPVHVDVKSEPFDSRKGEKRKMMRLNQCYRTNQSVCN* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2009 304 Pfam HSF-type DNA-binding 19 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal1g2009 304 Gene3D - 11 109 IPR036388 -
Mal1g2009 304 SMART hsfneu3 15 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal1g2009 304 ProSitePatterns HSF-type DNA-binding domain signature. 58 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal1g2009 304 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 288 IPR027725 -
Mal1g2009 304 Coils Coil 154 181 - -
Mal1g2009 304 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal1g2009 304 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal1g2009 304 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal1g2009 304 SUPERFAMILY "Winged helix" DNA-binding domain 16 108 IPR036390 -
Mal1g2009 304 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 7 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2009 Mal-Chr1 26451416 26452435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2009 11 304 HSF AT5G62020 48.718 2.89e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mal1g2009 HSF_DNA-bind 1.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2009 K09419 - gmx:100780987 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2009 1 26451416 26452435 Mal1g2009 1 26451416 26452435 ECH
Mal6g2844 6 75365572 75366696 Mal1g2009 1 26451416 26452435 PCT