Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2008 ATGGCTTTTCCTTTCAACATTCTACTACTCTCATACCTTCTCCTATTCCATCCATGTTCCTCCATAGACGTAAAAAATAACCAAAACCCAGAAAAACTTTCTCTTCTTTCATTCAAAGGGTCTCTTCAAAATTCTCACTTTCTTTCTTCATGGCACACTCAAAATTCTCACTGTAACTGGGTTGGTGTAACATGCCAACTCGGTAGAGTTACTTCACTCTCTCTTCCTTCTCTTTACCTCAAAAGCAATCTCTCTCTTTCTCTCTCATCTCTTTCTTCTCTCACTTCTCTCACTATCCTCAACCTCGAGGATAATCAGTTTTCCGGCGAACTCCCCGGTGAGCTTGGTGGGTTGTTTCACCTTGAAACTCTAAGACTTGGTTCAAACTCGTTCACCGGGAAAATTCCACCGGAGGTGGGATTTTTAAAGAAGCTAAGGACACTTGACCTTTCCGGTAATGCACTCGCCGGCGATATACCGGAGAGTTTTGGAAATTTGACAAAGCTTCAGTTTTTGGACCTTAGTAACAATGTTCTATCAGGTTCACTTCCGTTAACTCTTTTTACCGGAACGGTGAATTTGATTTCGATTGATATTTCGAATAACTCGTTTTCCGGCGAGCTTCCGGCGGAGATTGGAAACTGGAAGAATTTGACTGCACTTTACGTTGGGATAAACAAGTTGTCTGGTACATTGCCTAAGGAAATTGGAGAGCTTTCAAAGCTTGAAGTTTTGTATTCACCTTCTTGTTTGATTGAAGGTCCATTACCTGAAGAAATGGAGAAGCTTGAATTGTTGGAAAAACTTGATCTTTCTTATAACCCTTTGAAGTGTTCAATTCCAAAGTTTATTGGAAAGTTAAAAAATTTGAAAATTTTGAACCTTGTTTTTTCCGAGCTTAATGGGTCAATTCCATCTGAGCTAGGAAATTGTTCAAATTTAACTTCTGTGATGCTTTCTTTCAATTCATTATCTGGGTCATTGCCTCAAGAGCTTTCTATGCTTCCTATAAGAACTTTTTCAGCTGAAAAGAATTTTCTTCATGGTCCTTTGCCTTCTTGGCTTGGGAAGTGGAGTAATGTCGATTCTCTTTTGCTTTCGGCTAACCGGTTTTCGGGTGTGATTCCACCTGAGCTTGGGAATTGTTCTGTGATGGAGCATCTTAGTTTGAGTGGCAATTTGTTGACAGGTGATATACCTGAGGAGCTTTGTAATGCTGCTTCACTTTTGGAGATTGATCTTGATGATAACAACCTTAGTGGTACAATTGAGAAAGCTTTTGTGAATTGTAAGAACCTTACTCAATTGGTTTTGATGAATAATCAGATTGTTGGTTCTATACCGCAGTACCTTTCTGAGCTTCCTTTGATGGTGCTGGACTTAGACAACAACAATTTCAGTGGACAGATACCTTCTAGTTTGTGGAATTTATCAACACTGATGGAATTTTCTGCTGCCAATAACAACTTGGAGGGTTCTCTTCCTGTGGAGATTGGGAATGCTGTTATTCTACAAAGGCTTGTTCTTAGCAACAATCGTTTGAAAGGTACTATTCCTAAGGAAATTGGAAGTCTTTCAAGTCTTTCAGTTTTTAATTTGAATGGAAATATGCTTGAAGGGAACATTCCAACTGAGCTTGGTGATTGCATTTCACTCACAACTTTGGACCTTGGAAACAATCAACTCAATGGCTCAATTCCTGACAAATTGGTGGAACTTAGTGAATTACAGTGCCTAGTGCTTTCTCACAATAATCTGTCTGGGACTATTCCTTCCAAGGATTCTTCGTATTTTCGACAACTTACAGTCCCTGATTTGAGCTTTGTTCAACACCTTGGTGTGTTTGATCTATCTCACAATAGATTGTCTGGCACCATACCTGATGAATTGGGGAGCTGTGTAGTGGTTGTGGATCTATTGCTTAGCAACAACATGCTTTCCGGGAGCATTCCGAAATCACTCTCGCATTTGACGAATCTAACAACTTTGGATTTGTCTGGAAACTTGTTGTCAGGTTCCATTCCACCAGAGCTTGGAGATGCTGTTACACTCCAAGGATTATATTTGGAACAGAATCAACTCTCAGGTACCATCCCTGGAAGTTTTGGAAAGTTAACTGGTTTGGTGAAGCTGAATTTGACGGGAAACATGCTGTATGGTCCAATTCCAATTAGTTTTGGGAACATGAAGGAGTTGACTCACTTGGACTTGAGCTATAATGATCTCAGTGGCGAGCTTCCATCCATTATGTCTGGTGTGCAAAGCCTTGTTGGTCTTTATGTGCAGAATAACAAGCTCTCAGGCCATGTTGGGGAGCTTTTCTCAAACTCCATGACATGGAGGATTGAGACAATGAATTTAAGTTGCAATTGCTTTGACGGAAACTTGCCATGGTCTTTAGGAAATCTTTCCTACTTGACAATTTTGGATCTTCACCGAAATCTGTTAACCGGAGAGATTCCCGCAGACCTTGGGAATCTAATGCAACTTGAGTATTTTGATGTTTCAGGTAATCAATTATCTGGAAAGATTCCAGAGAAGTTATGCAGCCTAGTTAATTTAAATTACCTTGATTTCTCTCAAAACAGATTGGAAGGGCCTATTCCAGTAACTGGTATTTGCCAAAACCTATCCAAAGTTAGATTTTTGGGAAACAGGAACCTTTGCGGCCAGATGTTGGGTACAAATTGTGAGGTCAAAAGCATTGGTAGATATGCATTGTTTAATGTATGGAGGCTTGCTGTAATTGCCATCGCAGTCATATTAGTAACCTTGATATTTGCTTTTGCTCTGCATAGATGGATTAGCAGGAAGCGAAATGATCCTGAGGACCTGGAGGATCGGAAACTTAACAGTTATGTTGATCAAAATCTTTACTTCTTGAGCAGTAGCAGATCAAAGGAACCTTTGAGTATCAATGTAGCAATGTTTGAGCAGCCTCTTCTGAAATTAACTTTGGTTGATATCCTCAAAGCTACCGAGAATTTCAGCAAGACAAACATAATTGGAGATGGAGGTTTCGGAACCGTGTACAAGGCCACTTTACCAAATGAAAGAACAGTTGCTGTGAAGAAGCTTAGCGAAGCTAAAACGCAGGGTCATCGCGAGTTCATGGCTGAAATGGAAACCTTAGGCAAGGTAAAGCATCAAAACCTAGTTGCATTGCTTGGTTATTGCTCAATGGGTGAGGAGAAACTCCTTGTTTATGAATACATGGTAAATGGAAGCTTAGATCTTTGGTTGAGAAACAGAACCGGGGGACTTGAAATCCTCAATTGGAACAAACGTTACAAAATTGCGACGGGCGCAGCAAAAGGATTAGCTTTCCTTCATCATGGTTTCATACCTCACATCATTCATAGGGATGTTAAAGCTAGCAACATTTTACTAAATGAAGATTTTGAGCCGAAAGTCGCCGACTTTGGACTTGCAAGATTGATTAGTGCTTGTGAGACTCATATCACCACTGATATTGCTGGAACATTTGGTTACATTCCACCAGAGTATGGACAGAGTGGAAGATCAACAACAAGAGGCGATGTCTACAGTTTCGGTGTCATTTTACTTGAATTGGTGACCGGAAAAGAGCCAACAGGACCAGATTTCAAAGAGATTGAAGGTGGAAACTTGGTTGGATGGGTTGGTCAGAAGATCAAGAAGGGTCAAGCTGCTGATGTTCTTGATCCAACAGTTCTTGACGCAGATTCTAAGCAGATGATGCTTCAAATGCTGCAGATTGCTTGTGTCTGCCTCTCTGATAATCCTGCTAACAGGCCTACCATGTTTCAAGTGCACAAATTCTTGAAGGGGATGAAAGGAGATTAG 3825 0.4052 MAFPFNILLLSYLLLFHPCSSIDVKNNQNPEKLSLLSFKGSLQNSHFLSSWHTQNSHCNWVGVTCQLGRVTSLSLPSLYLKSNLSLSLSSLSSLTSLTILNLEDNQFSGELPGELGGLFHLETLRLGSNSFTGKIPPEVGFLKKLRTLDLSGNALAGDIPESFGNLTKLQFLDLSNNVLSGSLPLTLFTGTVNLISIDISNNSFSGELPAEIGNWKNLTALYVGINKLSGTLPKEIGELSKLEVLYSPSCLIEGPLPEEMEKLELLEKLDLSYNPLKCSIPKFIGKLKNLKILNLVFSELNGSIPSELGNCSNLTSVMLSFNSLSGSLPQELSMLPIRTFSAEKNFLHGPLPSWLGKWSNVDSLLLSANRFSGVIPPELGNCSVMEHLSLSGNLLTGDIPEELCNAASLLEIDLDDNNLSGTIEKAFVNCKNLTQLVLMNNQIVGSIPQYLSELPLMVLDLDNNNFSGQIPSSLWNLSTLMEFSAANNNLEGSLPVEIGNAVILQRLVLSNNRLKGTIPKEIGSLSSLSVFNLNGNMLEGNIPTELGDCISLTTLDLGNNQLNGSIPDKLVELSELQCLVLSHNNLSGTIPSKDSSYFRQLTVPDLSFVQHLGVFDLSHNRLSGTIPDELGSCVVVVDLLLSNNMLSGSIPKSLSHLTNLTTLDLSGNLLSGSIPPELGDAVTLQGLYLEQNQLSGTIPGSFGKLTGLVKLNLTGNMLYGPIPISFGNMKELTHLDLSYNDLSGELPSIMSGVQSLVGLYVQNNKLSGHVGELFSNSMTWRIETMNLSCNCFDGNLPWSLGNLSYLTILDLHRNLLTGEIPADLGNLMQLEYFDVSGNQLSGKIPEKLCSLVNLNYLDFSQNRLEGPIPVTGICQNLSKVRFLGNRNLCGQMLGTNCEVKSIGRYALFNVWRLAVIAIAVILVTLIFAFALHRWISRKRNDPEDLEDRKLNSYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILKATENFSKTNIIGDGGFGTVYKATLPNERTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVALLGYCSMGEEKLLVYEYMVNGSLDLWLRNRTGGLEILNWNKRYKIATGAAKGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVGQKIKKGQAADVLDPTVLDADSKQMMLQMLQIACVCLSDNPANRPTMFQVHKFLKGMKGD* 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2008 1274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1118 1130 IPR008271 GO:0004672|GO:0006468
Mal1g2008 1274 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 338 774 - -
Mal1g2008 1274 PRINTS Leucine-rich repeat signature 657 670 - -
Mal1g2008 1274 PRINTS Leucine-rich repeat signature 169 182 - -
Mal1g2008 1274 SUPERFAMILY RNI-like 74 396 - -
Mal1g2008 1274 SMART serkin_6 996 1268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal1g2008 1274 SMART LRR_typ_2 657 681 IPR003591 -
Mal1g2008 1274 SMART LRR_typ_2 525 549 IPR003591 -
Mal1g2008 1274 SMART LRR_typ_2 573 597 IPR003591 -
Mal1g2008 1274 SMART LRR_typ_2 803 827 IPR003591 -
Mal1g2008 1274 SMART LRR_typ_2 851 876 IPR003591 -
Mal1g2008 1274 SMART LRR_typ_2 166 190 IPR003591 -
Mal1g2008 1274 SMART LRR_typ_2 729 752 IPR003591 -
Mal1g2008 1274 SMART LRR_typ_2 142 165 IPR003591 -
Mal1g2008 1274 SMART LRR_typ_2 263 287 IPR003591 -
Mal1g2008 1274 SMART LRR_typ_2 609 633 IPR003591 -
Mal1g2008 1274 SMART LRR_typ_2 753 776 IPR003591 -
Mal1g2008 1274 SMART LRR_typ_2 94 118 IPR003591 -
Mal1g2008 1274 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 338 774 - -
Mal1g2008 1274 ProSitePatterns Protein kinases ATP-binding region signature. 1002 1025 IPR017441 GO:0005524
Mal1g2008 1274 Pfam Protein tyrosine and serine/threonine kinase 999 1268 IPR001245 GO:0004672|GO:0006468
Mal1g2008 1274 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 96 357 - -
Mal1g2008 1274 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 783 1272 - -
Mal1g2008 1274 Gene3D Ribonuclease Inhibitor 599 900 IPR032675 -
Mal1g2008 1274 Gene3D Ribonuclease Inhibitor 190 336 IPR032675 -
Mal1g2008 1274 Gene3D Ribonuclease Inhibitor 337 598 IPR032675 -
Mal1g2008 1274 SUPERFAMILY Protein kinase-like (PK-like) 977 1268 IPR011009 -
Mal1g2008 1274 Gene3D Transferase(Phosphotransferase) domain 1 1072 1274 - -
Mal1g2008 1274 ProSiteProfiles Protein kinase domain profile. 996 1268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal1g2008 1274 SUPERFAMILY L domain-like 598 890 - -
Mal1g2008 1274 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 14 125 - -
Mal1g2008 1274 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 783 1272 - -
Mal1g2008 1274 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 96 357 - -
Mal1g2008 1274 SMART LRR_sd22_2 851 879 - -
Mal1g2008 1274 SMART LRR_sd22_2 142 168 - -
Mal1g2008 1274 SMART LRR_sd22_2 657 672 - -
Mal1g2008 1274 SMART LRR_sd22_2 215 241 - -
Mal1g2008 1274 SMART LRR_sd22_2 729 755 - -
Mal1g2008 1274 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Mal1g2008 1274 SUPERFAMILY L domain-like 342 623 - -
Mal1g2008 1274 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Mal1g2008 1274 Gene3D Phosphorylase Kinase; domain 1 958 1071 - -
Mal1g2008 1274 Gene3D Ribonuclease Inhibitor 28 189 IPR032675 -
Mal1g2008 1274 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 14 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2008 Mal-Chr1 26399434 26403258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2008 31 1269 Receptor kinase-like Gene Family AT5G07280 59.438 0.0 1406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Mal1g2008 PK_Tyr_Ser-Thr 9.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2008 - - gmx:100780446 2034.22