Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g2003 ATGAACAGTTGCTATAAAGTTGCAAGACTTGTCACTGATACTTCTCTACCCTTTTCCAGTTCAATGCAAAATTCATCTACTTTTTTCTCAACTCAAAGAAAAATGGAGGGGCAGAGTGAGATGGGTCTCACTGGTGATAGTTTAGATACTGGTCTGCTTGGGAGAATGAGAGAGGATGAGTACGAAAGCCGGTCCGGAAGCGATAACTTTGATCTTGAAGGATTATCTGGTGATGATCAGGATGGTGCTGATGATGGTCAGCGCAAGAGGAAGAAGAGATACCACAGACACACTCCTAATCAAATTCAAGAGCTTGAATCCTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAACAAAGGTTGGATCTTAGCAAGAGACTTGGCTTGGAAAATAAACAAGTCAAATTCTGGTTTCAGAATCGTCGAACCCAAATGAAGACTCAACTGGAAAGGCATGAGAACATAATGCTTAGGCAAGAAAATGACAAGCTTAGAGGGGAGAACAGCATGATGAAAGATGCAATGGTGAATCCAGTATGTAACAACTGTGGTGGACCAGCAATTCCTGGCCAAATATTGTTCGAAGAGCACCAGATTAGAATCGAAAACGCCCGTTTAAAGGATGAATTGAACCGTATATGTGCCTTAACAAACAAGTTCCTCGGCAAACCAATATCATCATTGGCTAATCCCATGGCTCTACCAACCTCAAGTTCTGGTCTGGAACTTGGTATCGGAAGGAACGGTTTTGGTGGTGGTTCAAGCTCTCTCGGCAACCCTTTGTCAATGGGACTTGATCTCGGAGATGGTCGTGCAATGCCTGGTATTAGTTCACCAATGGGATTGATGGGAAATAGTAATGATGTTCAGCTTGAGAGGTCGGTGCTTATAGATCTTGCATTGGCTGCTATGGATGAATTATTAAAGATGGCTCAGACAGATAGTCCTGTTTGGATTAAGGGTTTGGATGGAGAGAGAGACATATTGAATCAAGAAGAGTATGCACGGTTGTTTTCTTCTTGTATTGGTCCCACACCTGCTGGTTTTGTCACTGAAGCTACTAGAGAAACAGGGATAGTAATTGTCAACAGTTTAGCACTGATGGAAACTTTGATGGACGCGAATCGATACGCAGAAATTTTTCAGTCCATGATTGCTAGATCTGTCAACCTTGATGTTTTATCGGGTGGAATCGGTGGAACCAGAAATGGTGCTATACATCTGATGCATACTGAAGTTCAATTGCTCTCACCACTAGTCCCGGTTCGTCAAGTGAGAACCCTTCGGTTCTGTAAGCAGCATGCAGAAGGTGTATGGGCTATGGTTGATGTTTCTGTTGACATTGGTCATGATGCTTCTAGTGCACAACCTTTCATTACCTGTAGGAGACTTCCTTCTGGCTGTATTGTGCAGGATATGCCAAATGGTTACTCCAAGGTCACTTGGATTGAGCATTGGCAATATGATGAGAGTGTTGTTCACCAACTCTATCGTCCATTGCTTATTTCCGGTTTTGGATTTGGCGCTCATAGATGGATTGCCACCCTCCAAAGGCAGTGCGAAGGCTTGGCTATGCTCATGTCCTCTTCCATCTCAAGCGATGATCACACTCCATTGAGCCAAGCTGGTAGAAGAAGCATGTTAAAGCTGGCGCAACGTATGACCAACAATTTCTGTTCTGGAGTTTGTGCTTCATCTGCTAGAAAATGGGACAACCTTCAAATGGGGACTCTGAGTGATGACATGAGAGTTATGACTAGGAAAAATGTTGATGACCCTGGCGAGCCTGCTGGTATCGTGCTTAGCGCTGCCACATCTGTTTGGATGCCAGTTTCACGACAAAGACTGTTTGATTTTCTGCGTGATGAAAGGCTTAGAAGCGACTGGGACATTTTGTCCAATGGTGGACCCATGCAAGAGATGTTTCACATTGCCAAAGGACAAGGGCAAGGAAATTGTGTTTCTCTCCTTCGTGCTAATGCCGTTAATGCGAATGATAGCAGCATGTTGATTCTGCAAGAGACATGGATGGATTCATCGTGTTCTTTGGTGGTATATGCACCTGTTGACGGGCAATCATTGAACGTGGTGATGAGTGGTGGAGATTCTGCATATGTTGCACTCTTGCCTTCAGGCTTTGCCATTGTTCCTGATGGTAATGATTCCTCTAGCTATGGCGCAGCAAATGGTACTTTACAGAAAGGTGGTGCTGGTGACGGTGGAGGAAGTTTACTCACAGTTGGATTCCAAATTCTGGTGAATAGTCTTCCAACTGCTAAGCTCACAATGGAGTCAGTTGATACTGTGAATAACCTCATCTCATGCACCATTCAGAAGATCAAAGCTGCACTTAGAGTTGCATAA 2364 0.4408 MNSCYKVARLVTDTSLPFSSSMQNSSTFFSTQRKMEGQSEMGLTGDSLDTGLLGRMREDEYESRSGSDNFDLEGLSGDDQDGADDGQRKRKKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRGENSMMKDAMVNPVCNNCGGPAIPGQILFEEHQIRIENARLKDELNRICALTNKFLGKPISSLANPMALPTSSSGLELGIGRNGFGGGSSSLGNPLSMGLDLGDGRAMPGISSPMGLMGNSNDVQLERSVLIDLALAAMDELLKMAQTDSPVWIKGLDGERDILNQEEYARLFSSCIGPTPAGFVTEATRETGIVIVNSLALMETLMDANRYAEIFQSMIARSVNLDVLSGGIGGTRNGAIHLMHTEVQLLSPLVPVRQVRTLRFCKQHAEGVWAMVDVSVDIGHDASSAQPFITCRRLPSGCIVQDMPNGYSKVTWIEHWQYDESVVHQLYRPLLISGFGFGAHRWIATLQRQCEGLAMLMSSSISSDDHTPLSQAGRRSMLKLAQRMTNNFCSGVCASSARKWDNLQMGTLSDDMRVMTRKNVDDPGEPAGIVLSAATSVWMPVSRQRLFDFLRDERLRSDWDILSNGGPMQEMFHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDSSCSLVVYAPVDGQSLNVVMSGGDSAYVALLPSGFAIVPDGNDSSSYGAANGTLQKGGAGDGGGSLLTVGFQILVNSLPTAKLTMESVDTVNNLISCTIQKIKAALRVA* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g2003 787 MobiDBLite consensus disorder prediction 29 100 - -
Mal1g2003 787 Gene3D - 78 163 - -
Mal1g2003 787 Pfam Homeodomain 91 146 IPR001356 GO:0003677
Mal1g2003 787 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Mal1g2003 787 Coils Coil 142 162 - -
Mal1g2003 787 SUPERFAMILY Bet v1-like 549 781 - -
Mal1g2003 787 CDD START_ArGLABRA2_like 293 521 - -
Mal1g2003 787 CDD homeodomain 90 148 IPR001356 GO:0003677
Mal1g2003 787 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 31 785 IPR042160 -
Mal1g2003 787 ProSiteProfiles START domain profile. 289 525 IPR002913 GO:0008289
Mal1g2003 787 Pfam START domain 299 521 IPR002913 GO:0008289
Mal1g2003 787 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Mal1g2003 787 SUPERFAMILY Bet v1-like 291 522 - -
Mal1g2003 787 SMART START_1 298 522 IPR002913 GO:0008289
Mal1g2003 787 MobiDBLite consensus disorder prediction 52 67 - -
Mal1g2003 787 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 31 785 - -
Mal1g2003 787 Gene3D - 302 517 IPR023393 -
Mal1g2003 787 SMART HOX_1 89 152 IPR001356 GO:0003677
Mal1g2003 787 SUPERFAMILY Homeodomain-like 74 148 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g2003 Mal-Chr1 26319239 26323419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g2003 8 784 Homeobox Transcription Factor Family AT3G61150 59.062 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal1g2003 START 2.5e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g2003 K09338 - gmx:100785102 1223.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2003 1 26319239 26323419 Mal6g2854 6 75933679 75938470 ECH
Mal6g0664 6 9236794 9242895 Mal1g2003 1 26319239 26323419 ECH
Mal1g2003 1 26319239 26323419 Mal1g2003 1 26319239 26323419 ECH