Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1992 ATGAAAGCTATTTTCTGTGGAAATTTTGAATATGATTGCCGGGAGACTGAGCTGGAGCGGCTTTTTAGACGGTACGGGAAGGTTGATAGGGTGGATATGAAGGCTGGATTTGCTTTTATCTATATGGAAGATGAGAGAGATGCTGAGGCTGCAATTCGCGCTCTTGATCGGATAGAATTTGGTCGAAAGGGGCGCAGACTTCGCGTTGAATGGACAAAGCAAGAACGTGGCATCCGAAGGCCTGCTGAGCGTCCAAAAAGATCTTCAGCTAATGGGAGACCATCAAAGACCTTATTTGTAATTAATTTTGATACATATCAGACCAGAACAAGGGACTTGGAGAGGCACTTTGAGCCATATGGCAAGATAGTCAGTGTGAGGATCAGAAAGAATTTTGCGTTTGTTCAGTATGAATCGGAAGATGATGCTTGCAAAGCACTGGAAGCTACAAATAACAGCAAGTTGATGGATCGGGTTATTTCAGTTGAATTTGCTGCTAGAGATGATGATGCTAGGCGAAATGGACATAGTCCAGACAGAGGCCGTGATCGTCAACGTGACAGAAGCCGTGATGGAAGGCGATCACCCAGTCCTTATCGCAGAGAAAGGGGTAGTCCTGATTATGGCCATGGGCCTAGTCCATATAAGAGGGAGAGGAGCAGCCCTGACTATGGGCGTGGCAACAGTCGTAGTAGAAGCCCCCAACGAAGAAAGCGAGGTAGTCCTGCTTATGGGCGTAGAAGCATTAGTCCTTACAGAAGAGAGAGGGATGGTGCTGAGCCTGTTCGCGACACCAGCCGCAGTCCTTATCGCAAAGAGCGGCGTAGAACTGACCGGTCTCGGTCCCAGAGTCTCGAAGAAGGAGAGAGGACAGACCACCCTCAAAAAGGTCATGGATCTGACCATAGTCCTTATGATACTGTGAAGGATAGCCCTGAAAATGGCCATGACCGGAGGCACAGTCCTGATGCAAAAGGGAACCCCAGCCCATACAATGGTTCTAGAGGTAGCCCTAGTCCTGATGCCAAAGGGAACCCCAGCCCATTTAATGATTATGAAGGGAGCCCAAATACTGTGCCTGAACCCAGGGACAGTCCCAACTATGGTGGTCCTGAAAGTCCCATGCATGAACAATATCGAAGCCAGAGCCAGTCACCCCCTGCAGAAGAATGA 1173 0.4885 MKAIFCGNFEYDCRETELERLFRRYGKVDRVDMKAGFAFIYMEDERDAEAAIRALDRIEFGRKGRRLRVEWTKQERGIRRPAERPKRSSANGRPSKTLFVINFDTYQTRTRDLERHFEPYGKIVSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAARDDDARRNGHSPDRGRDRQRDRSRDGRRSPSPYRRERGSPDYGHGPSPYKRERSSPDYGRGNSRSRSPQRRKRGSPAYGRRSISPYRRERDGAEPVRDTSRSPYRKERRRTDRSRSQSLEEGERTDHPQKGHGSDHSPYDTVKDSPENGHDRRHSPDAKGNPSPYNGSRGSPSPDAKGNPSPFNDYEGSPNTVPEPRDSPNYGGPESPMHEQYRSQSQSPPAEE* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1992 390 SMART rrm1_1 3 70 IPR000504 GO:0003723
Mal1g1992 390 SMART rrm1_1 97 163 IPR000504 GO:0003723
Mal1g1992 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Mal1g1992 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Mal1g1992 390 MobiDBLite consensus disorder prediction 327 354 - -
Mal1g1992 390 PANTHER BNAC08G47240D PROTEIN 4 212 - -
Mal1g1992 390 SUPERFAMILY RNA-binding domain, RBD 3 87 IPR035979 GO:0003676
Mal1g1992 390 MobiDBLite consensus disorder prediction 249 324 - -
Mal1g1992 390 SUPERFAMILY RNA-binding domain, RBD 80 174 IPR035979 GO:0003676
Mal1g1992 390 MobiDBLite consensus disorder prediction 167 225 - -
Mal1g1992 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Mal1g1992 390 MobiDBLite consensus disorder prediction 167 390 - -
Mal1g1992 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Mal1g1992 390 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 212 - -
Mal1g1992 390 Gene3D - 86 179 IPR012677 -
Mal1g1992 390 Gene3D - 1 85 IPR012677 -
Mal1g1992 390 MobiDBLite consensus disorder prediction 376 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1992 Mal-Chr1 26152168 26155237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1992 3 162 Eukaryotic Initiation Factors Gene Family AT4G34110 23.429 2.41e-09 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1992 1 26152168 26155237 Mal1g1992 1 26152168 26155237 ECH