Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1990 ATGGATGGCACCAACAGCAACACTAATTATAACCCTTCAGCAGTGCCGCCACCAATACAACTCCCTGATGTACTAGTAACCTCTTCATCATCACCACCAACAACTCCTTCATCTTCTCCGGCAACAACTACCGGACGATACCGTGGAACCCGTTGTAGGAGTGGGAAATGGGTATCTGAGATACGTGAGCCACGTAAAACAAAGCGCATTTGGTTAGGAACATACCCTACAGCTGAAATGGCAGCTGCTGCTTATGATGTTGCTGCTCTAGCTTTAAAAGGACCTGATACAACTCTTAACTTTCCCAACTCCATTCACTCTTACCCTATTCCTGCTTCATTGTCTTCAACTGATATTCGTGCTGCTGCTGAAGCTGCTGCACAGGCCAGAATCATGAGACCACCATCTCAACAACAACAACAACAACAAAACCCTTCAGCATTTGGTTTTGATCAGGGAAGTTCTTCAGCTAGTGGAGTACAACAAGGTCATCATCATGAATATATTGATGAAGATGAGTTGTTGAACATGCCGAATTTGTTAGATGAAATGGCTAGAGGAATGCAGTGA 570 0.4439 MDGTNSNTNYNPSAVPPPIQLPDVLVTSSSSPPTTPSSSPATTTGRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPTAEMAAAAYDVAALALKGPDTTLNFPNSIHSYPIPASLSSTDIRAAAEAAAQARIMRPPSQQQQQQQNPSAFGFDQGSSSASGVQQGHHHEYIDEDELLNMPNLLDEMARGMQ* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1990 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 39 188 - -
Mal1g1990 189 MobiDBLite consensus disorder prediction 1 51 - -
Mal1g1990 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 39 188 - -
Mal1g1990 189 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Mal1g1990 189 SMART rav1_2 46 108 IPR001471 GO:0003700|GO:0006355
Mal1g1990 189 MobiDBLite consensus disorder prediction 132 174 - -
Mal1g1990 189 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Mal1g1990 189 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Mal1g1990 189 MobiDBLite consensus disorder prediction 132 162 - -
Mal1g1990 189 MobiDBLite consensus disorder prediction 23 49 - -
Mal1g1990 189 Pfam AP2 domain 51 94 IPR001471 GO:0003700|GO:0006355
Mal1g1990 189 ProSiteProfiles AP2/ERF domain profile. 46 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1990 Mal-Chr1 26135160 26138002 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1990 47 188 AP2-EREBP Transcription Factor Family AT5G52020 55.245 2.33e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal1g1990 AP2 2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1990 - - mtr:MTR_1g101550 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1990 1 26135160 26138002 Mal6g2954 6 80754892 80755545 ECH
Mal1g1990 1 26135160 26138002 Mal1g1990 1 26135160 26138002 ECH