Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1988 ATGTTTACTATGAATAATATTTCGGAGGCACATGATCCATGTTCATCATCTTCAGAGAGGTTTCTTGCAGAGACTATGCCGAAGAAGCGTGCAGGGAGGAAGAAGTTCAGAGAAACGCGCCACCCTGTGTACCGTGGTGTTAGAAAGAGAGATTCCGGAAAGTGGGTTTGTGAAGTAAGAGAACCTAACAAGAAGACTAGAATTTGGCTTGGAACATTTCCTACGCCGGAGATGGCGGCGCGGGCGCACGATGTGGCGGCGATTGCGCTGAGGGGAAGGTCTGCCTGTCTCAATTTTGCTGACTCTTCTTGGAGGTTGCCGGTTCCGGCAACAGCGGATGCTAGGGATATTCAAAAAGCGGCGGCAGAGGCAGCGGAGGCTTTCAGGCCGGAAGCTGAGTTTGAGAATAATGAAGGGAGGAAGGATAGTGAGGAGTTGTCAACGGTGGCGGTGGCGGTGGCGGAGACGGTGATGGAGCAACGAGAGGAGGAAGAAGATACGGTGCCGGAGTATTTGAGAAACATGGTACTTATGTCGCCGGCACATTACTGGGGGAGTGATTGTGGTGTTGCTGACGTGGAATTTGATGAAACTGAAGTTTCATTGTGGAGTTATTCATTTTAA 624 0.5032 MFTMNNISEAHDPCSSSSERFLAETMPKKRAGRKKFRETRHPVYRGVRKRDSGKWVCEVREPNKKTRIWLGTFPTPEMAARAHDVAAIALRGRSACLNFADSSWRLPVPATADARDIQKAAAEAAEAFRPEAEFENNEGRKDSEELSTVAVAVAETVMEQREEEEDTVPEYLRNMVLMSPAHYWGSDCGVADVEFDETEVSLWSYSF* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1988 207 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 205 IPR045277 GO:0003700
Mal1g1988 207 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Mal1g1988 207 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 5 205 - -
Mal1g1988 207 MobiDBLite consensus disorder prediction 1 36 - -
Mal1g1988 207 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Mal1g1988 207 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Mal1g1988 207 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Mal1g1988 207 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Mal1g1988 207 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Mal1g1988 207 MobiDBLite consensus disorder prediction 1 22 - -
Mal1g1988 207 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Mal1g1988 207 SUPERFAMILY DNA-binding domain 43 102 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1988 Mal-Chr1 26085662 26086285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1988 6 205 AP2-EREBP Transcription Factor Family AT5G51990 53.738 3.25e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal1g1988 AP2 3.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1988 1 26085662 26086285 Mal6g0162 6 2318158 2318817 ECH
Mal1g1988 1 26085662 26086285 Mal1g1988 1 26085662 26086285 ECH
Mal6g2944 6 80371976 80372668 Mal1g1988 1 26085662 26086285 PCT