Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1976 ATGGCTGAAGAGGAACAACCAAAGGATCTCAACTATATTCCAGAGGTTATATTGAAGAAGAGGAAACACAGTGAAGCATGGGCTTTGAGTAAAAAGGCGCAACTCCAGAAAAAAAGTTTCCAGCTCAGGAAGTCCAAGGACTTCATTAAAAAGCCTGAGGATTTCATTTTTGAATATCGCAACAGGGAGATTGACCTTATTAGAATGAAACGAAGGGTCAAGAGGAAACGGGGAGATATATCAAGGCCAAGCAACAAGCCCATAATAGTCATTCGTATACAGGGGAAACAAGACATGCATCCTACAACCCGAAAGCACTTATTCAGTTTGGGATTGAGAAGAATATTCAGTGCTGTCTTTGTGAAGCCAACTGATGGAGTGATGGCCAAGCTGGCGAGAGTTGAACCATATGTTACCTATGGTTATCCAAATCTTAAAAGCATAAAGGAGCTAATTTACAAGAAGGGACATGCGAAAATGGAGAAGCGAAAAGTTCCTTTGACAGACAATAACCTTATTGAGCAGGAATTGGGGAAGTTTGGTATTGTATGCATAGAAGACATGGTGCATCAAATTGACAATGTTGGTCCACACTTTAAGGAAGTTGTCCGATTTATGTGGCCCTTTGAACTGAACAAGCCAGCAGATGGATTGAAAGGATTGAAAAACCGATACAAGGATGGTGGAGATTCAGGTGACCGTGAGGATCTCATCAATGAGCTCATCAATAAAATGAATTAA 741 0.4076 MAEEEQPKDLNYIPEVILKKRKHSEAWALSKKAQLQKKSFQLRKSKDFIKKPEDFIFEYRNREIDLIRMKRRVKRKRGDISRPSNKPIIVIRIQGKQDMHPTTRKHLFSLGLRRIFSAVFVKPTDGVMAKLARVEPYVTYGYPNLKSIKELIYKKGHAKMEKRKVPLTDNNLIEQELGKFGIVCIEDMVHQIDNVGPHFKEVVRFMWPFELNKPADGLKGLKNRYKDGGDSGDREDLINELINKMN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1976 246 CDD Ribosomal_L7_archeal_euk 88 246 IPR035808 -
Mal1g1976 246 Pfam Ribosomal protein L30p/L7e 89 138 IPR016082 -
Mal1g1976 246 TIGRFAM uL30_euk: 60S ribosomal protein uL30 14 246 IPR005998 GO:0000463|GO:0003735|GO:0022625
Mal1g1976 246 PANTHER 60S RIBOSOMAL PROTEIN L7-1 4 246 - -
Mal1g1976 246 PANTHER 60S RIBOSOMAL PROTEIN L7 4 246 IPR039699 -
Mal1g1976 246 Gene3D - 88 188 IPR036919 -
Mal1g1976 246 Gene3D - 189 246 IPR036919 -
Mal1g1976 246 SUPERFAMILY Ribosomal protein L30p/L7e 89 246 IPR036919 -
Mal1g1976 246 Pfam Ribosomal L30 N-terminal domain 13 77 IPR012988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1976 Mal-Chr1 25984250 25986130 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1976 1 246 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 52.823 8.25e-83 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1976 K02937 - gmx:100306107 372.474