Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1966 ATGGCTAAGGAAAAGGTTCGTATTAACATTGTGGTTATTGGTCATGTTGACTCTGGAAAGTCAACCACTACTGGTCATTTGATCTACAAGCTTGGAGGTATTGACAAGAGTGTCATTGAGAGATTTGAGAAAGAAGCTTCTGTGATAAACAAGCATTCATTCAAGTATGCTTGGGTGCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGTATCACAATTGACATTTCTATGCGTAAGTTTGAGACAAACAACTACAAATGCACTGTCATTGATACCCCCGGACACAGGGATTTCATTAAGAACATGATCAACGGGACGTCCCAAGCTGACTGTGCTTTGCTCATCATTGATTCCACCACTGGTGATTTTGAAGCTGGTATGAATGGTCAGACCTATGAACATGCTCTTCTTGCCTTCACTCTTGGTGTGAATCAAATGATCTGCTGCTGCAACAAGATGGATGCCACTACACCCAAATACTCCCAGATTAGGTATATGCAAATTCTGAAACAAGTTATTCCCTTTTTGATCAAGGTTGGCTATAACCCATATAAAGTTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACTTGATTGAGCCCTCTACTAATCTTGGCTGGTACAACGGTCTCACCCTTCTTGAAGCTCTTGACCAAATCAACGAGCCTAAGAGGCCATCAAACATGCCTCTCCGACTACCACTTCAGGGTGTCTACAAGATTGGAGGAATCGGAACTGTGGCTGTGGGATGTGTTGCGACTGGTTTCTTGAACCCTGGAATGTTGGTGACTTTTGCCCCAACTGGGCTGCAAGATGAAGTGAAGTCTGTGGAGATGCACCATGATCCTGGTGACGTTGTGGAATTTAGTGAGATGTACCGTGATGCTCTCAATGTGGCCTATCCTGGTGACATTGTGGAATTTAGTGTTAATGCTTCTGCTAGGGATCTCAAGCGAGGCTATGTTGCCTCAAACTCCAAGGATAACCCAGCCATGGAGACCGCTCACTTTACATCTCATGTTATCATCGCGAATCACCCTGGCCAGATTAGAAATGGCTATACACCTGTTCTTGACTGCCACACCTCCCACACTGCTGTCAAGTTTGTTGAGCTTATTTCCAAGGTTGACATTTCTTCCGGTGAGGTAACTGAGAAGAAACCCGAATTCTTTAAGAGTGGTGATGCTGGTCTTATTAAGATGATTCCCACCAAGCCTATGGTGGTAGAGCCTTTCTCTCTATTTCCTCCACTCGGCCGGTTTGCTGTCAGAGACATGCATCAAACTGTGGCTGTTGGTGTCGTCAAGTCTGTGACGAGGAAGATTCATGATGCAGGAGCTGCCTTTGCCAAATGCCAAAAGCGAAAGTTAAATTACCAAGGCAATTACACAGAACAGGACATTGAAACAGGGCGAGGTACCAGTTCAAGTTATAATAAAGCTCTTGCTGACAGAGATAAGCTTGAGTCACTATGCATGGAGTTACAACGTCAAAATAAAATGCTGATGGAAGAATGCAAACGTGTATCTACTGAGGGGCAACAATTAAAGCTGGACTTGTCAGCCAAGTTCCAAGATGCAATCAAGAACCTTCATCCTGACAATGCCTTTGAGGAATGCATAAGACAAGAGCTTATCCCTGCAAATGAGATAGAGGCGACTTTTTCAGATATTGGTGCTTTGGATGATGTTAAAGAATCACTTCAAGAAGCGGTTATGCTTCCTCTTAGAAGACCATATCTATTCAAAGGCGATGGGGTTCTGAAGCCATGTAAAGGTGTATTGCTTTTTGGACCTCCTGGTACAGGTAAGACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATCAATGTCTCTCCGTCCACCATCACTTCAAAGTGGTTCGGACAACCTGAAAAGAACATCCGAGCTCTGTTTTCACTTGCGGCAAAGGTTGCCCCAACTATTATTTTCATCGATGAAGTGGATAGCATGCTTGGGAAGCGGTCTAGCGTTTATGACAATTCAATGAGAAGGATGAAAAATGAATTCATGTCACGATGGGATGGACTATTGTCAAAACCTGATGACAAAATTATTGTTCTTGCTGCCACCAACATGCCATTTGACCTTGATGAAGCAATTATAAGACGGTTTCAGCGAAGGATTATGGTTGGTCTTCCGTCTGCTGAAAACAGGGAAACGATCTTGAAAACTCTTCTAGCTAAGGATAAACATGAAGATATAGACTTCAAAGAGCTTTCAACTATGACAGAAGGATATAGTGGAAGTGATCTTAAGAACTTGTGCATGACTGCAACATATTTCCCCCTTAAGGAGCTAACACAGCAGGAGAAGGAAAAAAAAAAGAAGAAAAATGTGGAAGTTGAAATCTTAGAAGATGCTTCCAATGATACCATAGACGATAAAGAAGATCAAGTGATTGCCCTCAGGCCTTTAAACATGGAAGACATGAGACAGGCAAAGAATAAGGTGGCTGCAAGTTTTGCTGCAGAAGGATCATTGATGAAGAGGTTGAAGGAGTGGAATGATTTGTATGGAGAAGGAGGTTCAAGGAAGAAAGAGGAGGAGCTCAGTTATTTTCTTTAG 2604 0.4297 MAKEKVRINIVVIGHVDSGKSTTTGHLIYKLGGIDKSVIERFEKEASVINKHSFKYAWVLDKLKAERERGITIDISMRKFETNNYKCTVIDTPGHRDFIKNMINGTSQADCALLIIDSTTGDFEAGMNGQTYEHALLAFTLGVNQMICCCNKMDATTPKYSQIRYMQILKQVIPFLIKVGYNPYKVPFVPISGFEGDNLIEPSTNLGWYNGLTLLEALDQINEPKRPSNMPLRLPLQGVYKIGGIGTVAVGCVATGFLNPGMLVTFAPTGLQDEVKSVEMHHDPGDVVEFSEMYRDALNVAYPGDIVEFSVNASARDLKRGYVASNSKDNPAMETAHFTSHVIIANHPGQIRNGYTPVLDCHTSHTAVKFVELISKVDISSGEVTEKKPEFFKSGDAGLIKMIPTKPMVVEPFSLFPPLGRFAVRDMHQTVAVGVVKSVTRKIHDAGAAFAKCQKRKLNYQGNYTEQDIETGRGTSSSYNKALADRDKLESLCMELQRQNKMLMEECKRVSTEGQQLKLDLSAKFQDAIKNLHPDNAFEECIRQELIPANEIEATFSDIGALDDVKESLQEAVMLPLRRPYLFKGDGVLKPCKGVLLFGPPGTGKTMLAKAIANEAGASFINVSPSTITSKWFGQPEKNIRALFSLAAKVAPTIIFIDEVDSMLGKRSSVYDNSMRRMKNEFMSRWDGLLSKPDDKIIVLAATNMPFDLDEAIIRRFQRRIMVGLPSAENRETILKTLLAKDKHEDIDFKELSTMTEGYSGSDLKNLCMTATYFPLKELTQQEKEKKKKKNVEVEILEDASNDTIDDKEDQVIALRPLNMEDMRQAKNKVAASFAAEGSLMKRLKEWNDLYGEGGSRKKEEELSYFL* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1966 867 CDD EF1_alpha_II 231 330 - -
Mal1g1966 867 SMART AAA_5 591 727 IPR003593 -
Mal1g1966 867 SUPERFAMILY Translation proteins 230 332 IPR009000 -
Mal1g1966 867 Gene3D - 1 224 IPR027417 -
Mal1g1966 867 CDD AAA 593 725 - -
Mal1g1966 867 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 228 IPR000795 GO:0003924|GO:0005525
Mal1g1966 867 ProSitePatterns AAA-protein family signature. 697 716 IPR003960 GO:0005524|GO:0016887
Mal1g1966 867 CDD EF1_alpha_III 333 436 - -
Mal1g1966 867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 247 IPR027417 -
Mal1g1966 867 Coils Coil 479 513 - -
Mal1g1966 867 Coils Coil 780 800 - -
Mal1g1966 867 Pfam Elongation factor Tu GTP binding domain 8 220 IPR000795 GO:0003924|GO:0005525
Mal1g1966 867 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 336 439 IPR009001 -
Mal1g1966 867 Gene3D Translation factors 227 326 - -
Mal1g1966 867 Gene3D Translation factors 334 440 - -
Mal1g1966 867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 805 IPR027417 -
Mal1g1966 867 Pfam Myosin-like coiled-coil protein 456 532 IPR026183 GO:0019905
Mal1g1966 867 CDD EF1_alpha 9 225 - -
Mal1g1966 867 Pfam AAA+ lid domain 746 782 IPR041569 -
Mal1g1966 867 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 442 IPR004539 GO:0003746|GO:0005525|GO:0006414
Mal1g1966 867 PANTHER ELONGATION FACTOR 1-ALPHA 1 449 - -
Mal1g1966 867 PANTHER TRANSLATION FACTOR 1 449 - -
Mal1g1966 867 Pfam Elongation factor Tu C-terminal domain 333 439 IPR004160 -
Mal1g1966 867 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Mal1g1966 867 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Mal1g1966 867 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Mal1g1966 867 PRINTS GTP-binding elongation factor signature 146 155 IPR000795 GO:0003924|GO:0005525
Mal1g1966 867 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Mal1g1966 867 Gene3D - 554 847 IPR027417 -
Mal1g1966 867 Pfam ATPase family associated with various cellular activities (AAA) 595 724 IPR003959 GO:0005524|GO:0016887
Mal1g1966 867 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Mal1g1966 867 Gene3D - 726 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1966 Mal-Chr1 25855885 25862314 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1966 1 442 Eukaryotic Initiation Factors Gene Family AT5G60390 74.607 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1966 K03231 - gmx:100801611 665.611