Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1965 ATGGATGACGAAAAAGTTCATATTAACATTGTGGTTATTGGTCATGTCAACTCTGGGAAGTCAACCACTGCTGGTCATTTGATCTACAAGCTTGGAGGTATTGACAAGAGTGTCATTGAGAGTTTCGAGAAAGAAGCTTCTGAGACGAACAAGCATTCATTCAAATATGCTTGGGTGCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGTATCACAATCGACATTTCTATGTGGAATTTTGAGACAACCAAGTACCGCTGCACTCTCATTGATGCCCCCGGACACAGGGATTTTATTAAGAACATGATTACTGGGACATCCCAAGCTGATTGTGCTATTCTTATTGTTGATTCCACTCCTGGTGGTTTTGGAGCCGGTATTTCGAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAGGCAAATGATCTGCTGCTGCAACAAGATGGATGCCATTATGCCCAAATACTTCAAGTATAGGTATGAAGAAGTTGTTAAGCAACTTTCACCCTATCTGAAGAAGGTTGGCTATAACCCAGACAAAATTCCATTTGTTCCCATATCTGGTTTTGAGGGAGATAACTTGATTGAGCACTCTACTAATCTTGGCTGGTACAAGGGTCCCACCCTTCTTGAAGCTCTTGACCAAATTAACAAGCCTAAGAGGCTATCAAACAAGCCTCTCCGATTACCACTTCAGGATGTCTACTGGATTGGAGGAATTGGAACTGTGGCTGCGGGATGTGTTGAGACTGGTATCTTGAAACCTGGAATGGTGGTGACTTTTGCCCCAATTGGGCTGCAAGATAAAGTGATGTCTGTGCAGATGGACCATAAATATCTCACTGAGGCCCTTCCTGGTGACAATGTGGGATTTAATGTTAAGAATGTGCCTGATGCTCATCTCAGGCGAGGCTATGTTGCCTCAAACTCCAAGCATGGCCCAGCCAAGGAGGCCACTAACTTTACTTCTAAAGTTATTATCACAAATCACCCTGGCCAGATTGGAAATGGCTATACACCTGTTCTTGACTGCCACACCTCCCACATTGCTGTCAAATTTGCTAAGCTTGTTGCCAAGATTGACAGGTCTTCTGGTAAGGTAATTGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGGTGCCATTGTTGATATGATTCCTACCAAGCCCATGGTGGTAGAGACTTATTCTAAATATCCTTCACTCGGCCGTTTTGTTGTCAGAGATATGCGTCGAACTGTGGCTGTTGGAGTTATCAAGGCTGTGACGAAGAAGGATCCTGATGCAGGAGCTCTTGCTGGCAGAGATAAATTTGAGTCACTATGCAGGGAGTTACAACATCAAAATAAAATGCTGATGGAAGAATGCAAACGTGTATCTACTGAGGGGCAACAATTAAAGCTGGACTTGTTGGCCCAGGTCAAAGATGCAAACAAGGAAGAATTAAAACTATTGGTGCCGGAATTGGTAGCCAAGTTACAAGATGCAATCAAGAAAGTTCGTCCTGACAATGACTCGGAGGAATGCATAAGAAAAGAGCTTATCCCTGCAAATGAGATAAAGGTGACCTTTTCAGATATTGGCGGTTTGAATGATGTTAAAGAATCACTTGAAGAAGCGGTTATGCTTCCCCTTAGAAGACCTGATCTATTCAAAGGTGATGGGGTTCTGAAGCCATGTAAAGGTGTATTACTTTTTGGACCTCCTGGTACAGGAAAGACAATGCTTGCAAAGGCAATTGCTAATGAAGCTGGAGCAAGTTTCATCAATGTCTCTCTGTCCACCATCACTTCAATGTGGTTCGGACAAGCTGAAAAGAACGTCCGAGCTCTGTTTTCACTTGCGGCAAAGGTTGCCCCAACTATAATTTTCATCGATGAAGTAGATAGCATGCTTGGGCAGCGGTCTAGCGGTTGTGAGCACATGAGAAGGGTGAAAAATGAATTCATGCCCCAATGGGATGGATTATTGTCAAAACCTGATGAGAAAATTATTGTTCTTGCTGCCACCAACATGCCATTTGACCTTGATGAAGCAATTGTAAGACGGTTCCAGCGTAGGATCATGGTGGGTCTTCCGTCTGCTGAAAACAGGGAAACGATCTTGAAAACTCTTCTAGCTAAGGATAAACATGAAGATATAGACTTCAAAGAGCTTTCAACTATGACAGAAGGATATAGTGGAAGTGATCTGAAGAACTTGTGCGTGGCTGCAGCATATCGCCCCCTTAAGGAGCTAATACAACAGGAGAAGGAAAAAGAAACGAAAAAGAAGAAAAAGGTGGAAGAAGTTGAAATCTTAGAAAATGCTTCCAATGCTACCGAAGAAGATAAAGAAGATCAAGTGATTGCCCTCAGGCCTTTAAACATGGAAGACATGAGACAGGCTAAGAATAAGGTGGCTGCAAGTTTTGCTGCAGAAGGATCATTAATGAACAAGTTGAAGGAGTGGAATGGTTTGTATGGAGAAGGAGGTTCCAGGAAGAAAGAGGAGCAGCTCAGTTATTTTCTTTAA 2535 0.432 MDDEKVHINIVVIGHVNSGKSTTAGHLIYKLGGIDKSVIESFEKEASETNKHSFKYAWVLDKLKAERERGITIDISMWNFETTKYRCTLIDAPGHRDFIKNMITGTSQADCAILIVDSTPGGFGAGISKDGQTREHALLAFTLGVRQMICCCNKMDAIMPKYFKYRYEEVVKQLSPYLKKVGYNPDKIPFVPISGFEGDNLIEHSTNLGWYKGPTLLEALDQINKPKRLSNKPLRLPLQDVYWIGGIGTVAAGCVETGILKPGMVVTFAPIGLQDKVMSVQMDHKYLTEALPGDNVGFNVKNVPDAHLRRGYVASNSKHGPAKEATNFTSKVIITNHPGQIGNGYTPVLDCHTSHIAVKFAKLVAKIDRSSGKVIEKEPKFLKNGDGAIVDMIPTKPMVVETYSKYPSLGRFVVRDMRRTVAVGVIKAVTKKDPDAGALAGRDKFESLCRELQHQNKMLMEECKRVSTEGQQLKLDLLAQVKDANKEELKLLVPELVAKLQDAIKKVRPDNDSEECIRKELIPANEIKVTFSDIGGLNDVKESLEEAVMLPLRRPDLFKGDGVLKPCKGVLLFGPPGTGKTMLAKAIANEAGASFINVSLSTITSMWFGQAEKNVRALFSLAAKVAPTIIFIDEVDSMLGQRSSGCEHMRRVKNEFMPQWDGLLSKPDEKIIVLAATNMPFDLDEAIVRRFQRRIMVGLPSAENRETILKTLLAKDKHEDIDFKELSTMTEGYSGSDLKNLCVAAAYRPLKELIQQEKEKETKKKKKVEEVEILENASNATEEDKEDQVIALRPLNMEDMRQAKNKVAASFAAEGSLMNKLKEWNGLYGEGGSRKKEEQLSYFL* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1965 844 PANTHER ELONGATION FACTOR 1-ALPHA 1 438 - -
Mal1g1965 844 Gene3D - 700 778 - -
Mal1g1965 844 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Mal1g1965 844 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924|GO:0005525
Mal1g1965 844 PANTHER TRANSLATION FACTOR 1 438 - -
Mal1g1965 844 CDD EF1_alpha_III 323 426 - -
Mal1g1965 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 526 760 IPR027417 -
Mal1g1965 844 Gene3D Translation factors 323 430 - -
Mal1g1965 844 Pfam AAA+ lid domain 720 758 IPR041569 -
Mal1g1965 844 Gene3D - 528 699 IPR027417 -
Mal1g1965 844 ProSitePatterns AAA-protein family signature. 671 690 IPR003960 GO:0005524|GO:0016887
Mal1g1965 844 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Mal1g1965 844 SMART AAA_5 566 701 IPR003593 -
Mal1g1965 844 CDD AAA 568 699 - -
Mal1g1965 844 Coils Coil 442 469 - -
Mal1g1965 844 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Mal1g1965 844 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 227 IPR000795 GO:0003924|GO:0005525
Mal1g1965 844 Gene3D Translation factors 230 316 - -
Mal1g1965 844 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Mal1g1965 844 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Mal1g1965 844 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Mal1g1965 844 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Mal1g1965 844 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Mal1g1965 844 CDD EF1_alpha_II 230 318 - -
Mal1g1965 844 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Mal1g1965 844 Coils Coil 750 784 - -
Mal1g1965 844 Pfam ATPase family associated with various cellular activities (AAA) 570 698 IPR003959 GO:0005524|GO:0016887
Mal1g1965 844 Pfam Elongation factor Tu C-terminal domain 321 429 IPR004160 -
Mal1g1965 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 249 IPR027417 -
Mal1g1965 844 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Mal1g1965 844 CDD EF1_alpha 9 227 - -
Mal1g1965 844 Gene3D - 1 226 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1965 Mal-Chr1 25840532 25849100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1965 1 434 Eukaryotic Initiation Factors Gene Family AT5G60390 80.876 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1965 K03231 - gmx:100801611 718.383