Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1961 ATGTGTCGTTTTCTGCAGTTGAAGTCAGAGAGAGAGAGAGAGAGAGAGAGTATGGGTAGAGGGAAGGTGGTTCTGGAGAGAATACAGAACAAGATCAATAGACAAGTAACATTCTCAAAGAGAAGGAGTGGTTTGCTGAAGAAAGCCTTTGAACTTTCTGTGTTATGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAGTCTTGGCAAGCTTTTTCAATACAGTTCCACATCTGACTTGAATATAATAATTGAGAAGTATCGTCAATGTTGCTTCAACAATATGTCTGAGAATGGCGACTTGGGAGAACATGAATCACAGGGCTTATACCAGGAGCTTTTGATGCTAAGAGTCAAGCATGAATCTCTTGCCCGGACACAAAGGAATTTTCTGGGAGAAGAAATCAATGCACTTAGCATAAAAGATTTGGAAAGCCTAGAGAAACAACTCGAGAGAACACTTGCACAAGCTCGAAAGCACCAAATACAAAAGCTGATGGCAAGAGTTGATGAATTACGTGAGGAGGTGGACAAGGTGGAGGAGGTCAACAAACAATTAGAATCCAAGGAAAGAGGTATAAGCACCACGATTCGTGACGATTCTACCATCTCCGGTAACAACAATATCATCACCAATTTGGATGATGCACAAGCCAATCAGTTTGAATATGGGACAACAAGGGGGTTTATGCACCTACAAGATGCTTCAAAAAGACAGGAAACAGATACAAGGACTGACAGAGGACAAAGCAGTCGCAACAAGAACATTGGATGGATGAATATTTAA 786 0.4122 MCRFLQLKSERERERESMGRGKVVLERIQNKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSLGKLFQYSSTSDLNIIIEKYRQCCFNNMSENGDLGEHESQGLYQELLMLRVKHESLARTQRNFLGEEINALSIKDLESLEKQLERTLAQARKHQIQKLMARVDELREEVDKVEEVNKQLESKERGISTTIRDDSTISGNNNIITNLDDAQANQFEYGTTRGFMHLQDASKRQETDTRTDRGQSSRNKNIGWMNI* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1961 261 ProSitePatterns MADS-box domain signature. 20 74 IPR002100 GO:0003677|GO:0046983
Mal1g1961 261 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
Mal1g1961 261 MobiDBLite consensus disorder prediction 233 249 - -
Mal1g1961 261 Coils Coil 136 192 - -
Mal1g1961 261 Pfam K-box region 103 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal1g1961 261 Gene3D - 30 108 IPR036879 GO:0003677|GO:0046983
Mal1g1961 261 PANTHER MADS-BOX TRANSCRIPTION FACTOR 18 210 - -
Mal1g1961 261 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Mal1g1961 261 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Mal1g1961 261 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Mal1g1961 261 SUPERFAMILY SRF-like 19 95 IPR036879 GO:0003677|GO:0046983
Mal1g1961 261 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal1g1961 261 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
Mal1g1961 261 PANTHER MADS BOX PROTEIN 18 210 - -
Mal1g1961 261 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 74 IPR002100 GO:0003677|GO:0046983
Mal1g1961 261 CDD MADS_MEF2_like 19 90 IPR033896 GO:0000977|GO:0045944
Mal1g1961 261 MobiDBLite consensus disorder prediction 231 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1961 Mal-Chr1 25790379 25793729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1961 18 189 MADS-box Gene Family AT2G45650 50.581 4.93e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal1g1961 K-box 2.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1961 K09264 - gmx:100802197 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1961 1 25790379 25793729 Mal1g1961 1 25790379 25793729 ECH