Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1933 ATGATTTCGACTGGGATTAACTTGGTGATGACTGTGATTGGTTTTGCTGTTAGCACAATGTTCATTGTTTTCGTATGCACAAGACTCATTTGTGCCAGAATTCACATGAATGCAAATAGGAGGAGATCCTTTCTCATTGCTTCTAGATCCAATCTCAGCTTGATGGAACGGGGTTGTCAAGGTCTTGAACGCGTAGATGTAGCTAAATTTCCAGTTAAGAAGTACAGTGACAAGTTTTTTGCAGCTGAAGAAAATTCTCAATGCACAGTCTGTCTCTCAGAGTACCAAGATGAAGATACACTGCGTATCCTCCCCCATTGTGGACACTCCTTCCATATGGCCTGCATAGACTTATGGCTGCAGCAAAATGCCACTTGTCCTGTTTGTCGAATATCATTGCGTGAATTTTCCGAGACAACGCGATCAATGCAACCTGTATATAGCTCCCATTATGGGATGGAGTCCTTTGACACCCATCATTATCACTGTATAATGGCTGATAATGGAATATCGACAAGAACCCCTGATAACCGTGGGGTGAACCCAATTCAAGAGGATCACTTTCCATCTGAGGGTGGTGGAGCAGTTGATACGGACAGTATTACCTCCTTAAGTCAGGGTGATTTCATTAAAGATGAAGAGAAGAAACGTGTAGAGAGTCCGTCAAATTTATAA 675 0.4237 MISTGINLVMTVIGFAVSTMFIVFVCTRLICARIHMNANRRRSFLIASRSNLSLMERGCQGLERVDVAKFPVKKYSDKFFAAEENSQCTVCLSEYQDEDTLRILPHCGHSFHMACIDLWLQQNATCPVCRISLREFSETTRSMQPVYSSHYGMESFDTHHYHCIMADNGISTRTPDNRGVNPIQEDHFPSEGGGAVDTDSITSLSQGDFIKDEEKKRVESPSNL* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1933 224 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Mal1g1933 224 PANTHER OS11G0150450 PROTEIN 1 223 - -
Mal1g1933 224 SUPERFAMILY RING/U-box 82 136 - -
Mal1g1933 224 SMART ring_2 88 129 IPR001841 -
Mal1g1933 224 Pfam Ring finger domain 87 130 IPR001841 -
Mal1g1933 224 MobiDBLite consensus disorder prediction 208 224 - -
Mal1g1933 224 PANTHER OS11G0150450 PROTEIN 1 223 - -
Mal1g1933 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 135 IPR013083 -
Mal1g1933 224 MobiDBLite consensus disorder prediction 174 224 - -
Mal1g1933 224 CDD RING-H2_PA-TM-RING 87 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1933 Mal-Chr1 25438051 25440157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1933 21 133 C3H Transcription Factor Family AT4G10150 39.167 2.30e-21 87.0