Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1897 ATGACAGATTTTGAATCTTTACAGCAAAAGCCTGAATCTGCTGATGCCCATGCTGGGTTCGAGAGTGGATTGGATGACTTTATGCGGGGTCATTTGGATGATTGTATGTCATTTGCTTCGTGTAGCTCTTCCCGGGTACAGGATGATGAGGACGATGAGAGTGATCAGCTGGTTCGAAGGAGGCGAAGGTCTGATCTTGAAGGAGATGATTTAGCAGAGTCATCAGCAGCACGGAGGCGCCATTCGCGAATTTTGAGTAGATGGGCTGCCCGGCAAGCGCAAGAGATGATAACTACTATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTTGCGGGGTTACATACGGTTTCCATGTTGGATTCCTCTTTTTTGAGGGGGTCGCAGTCTCCTACTTCTGGTCAGGAGGGGGCTGTGGAGAGACCGAGTACTCAGGCATCTTCCATTTTGCAGATGTGGCGTGAATTGGAGGATGAACATATGTTGAATCGGGCACGTGAAAGGATGCGGGAAAGGTTGAGGCAGCAGAGGAGCTCTGATGCTAATACCAATGTGTCAAGTACCATGTCTGACAGTCGAGGCAGTGAGAATCGAGGGAGCTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACCTGGTCACATGATCAGATTGGATCACGGAATGCACATGGGAATCATAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGCATTAGTGATCATTCATCTAATGTGAGCCAGAGAAACAACAACCACAGATCAGAATGGCTTGGAGAAACAGAGCGCGAGAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGACTAGTCAACAGCGAGGTTCACGTGGGAGCCGTAGAGATGCTCAAGTAAGTCAATCTGCTCCTGCTGATCGGATTCGTGATATTGCAGCTGACCATGATGAACGTCAGCCAGAGCATGTTCGGCGGGACATGTTGAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTTAGGGTAGAAAGGGAAAGACAAAGAGAGCTGGAGGGTTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAATCGTATTCAGTCATTGCTCAGAGGTAGATTCCTCCGAAATGAAACTGTTGAAGATGAGAGGCCTCCTTCTACAGCTGCAAGTGAATTAGTTCAGTTAAGACAACGACACACGGTCTCTGGTATAAGGGAGGGGTTCCGCTCAAGATTAGAAAATATTGTCCGTGGTCAATCAGGCACCAATCCTGATGCCACATTAAATAGTAACATTGATGAAACAAGACATGGTGAGAACCAATCAAACAATCTCATAGATACCCAACAAGAAAATTATGACCAAGAGCAGATTAGGAGCCCGGAAACTGATGCACGTCAGTTTCCTAATCAAACAGGAACTTTGGAGAGTAGCACAAGTGAGCCTATTAGTTGGCAAGAAGCTAGTAATCAAGGAGGGGATTGGCAGGAACAGATTACCGAAAATGGGGGAGGAAACTGGTCGCAGAGGATTAATGGTCCATTAAATCAGCTCAGAGATGGAAGGGAAGCCAGTGATTGGCCACAGGAAACTCCTAGAAATTCATCCGGGGAAGATCCTCATCCACAGGAAGCTCAAAGAATTTGGCAGGACGATAACACGCGGGAAGCTGTTGGTAATTGGTCTGATGGACCTTCTGCAGCTTCAAGGAATCGCCGTGGTGTTCCTTTTAGAAGATTCAATAGATTTCATCCTCCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTATCTAACCTTCTTCGCAGTGGTTTCCGTGAAAGTCTGGATCAACTGATACAGTCATATGTTGAAAGGCAAGGTCGTGCGCCAATTGACTGGGATTTGCATCGAAACTTGCCTACACCGGCTCCTGCCTCACCGGAACGAGACCCTGATCAGCAGGATGATGAACGTAATGAGGGACAGCATGAAGCCATTAACAGACCTTCACTGGTGATGCCTTCTCCACCAGTGCCCCCGCCGCAACCACTGTGGCACCAAGATTTGCACCAAACTGGATGGTCTCGCCATACTATGCACCGCTCTGAAATCGAATGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTTGAATTGCAGAGATCTGTCAGACAGGAGGTCTCTGCAGCTCTGAACCGCTCAGCTGGTGAAAATGGATTGGGTGGTGAGACATCTGATGATGGCTCTAAATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAACCACATTGATTCGCTTTTGTACAGATGTGGACACATGTGCACATGTTCAAAATGTGCCAGTGAGTTAATTCGTGGAGGAGGTAAGTGTCCTTTATGCCGAGCGCCTATTGTTGAGGTGGTCAGAGCATACTCCATACTGTAA 2556 0.473 MTDFESLQQKPESADAHAGFESGLDDFMRGHLDDCMSFASCSSSRVQDDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASSILQMWRELEDEHMLNRARERMRERLRQQRSSDANTNVSSTMSDSRGSENRGSLGDASESENDYGTWSHDQIGSRNAHGNHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNHRSEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQVSQSAPADRIRDIAADHDERQPEHVRRDMLRLRGRQALVDLLVRVERERQRELEGLLEHRAVSDFAHRNRIQSLLRGRFLRNETVEDERPPSTAASELVQLRQRHTVSGIREGFRSRLENIVRGQSGTNPDATLNSNIDETRHGENQSNNLIDTQQENYDQEQIRSPETDARQFPNQTGTLESSTSEPISWQEASNQGGDWQEQITENGGGNWSQRINGPLNQLRDGREASDWPQETPRNSSGEDPHPQEAQRIWQDDNTREAVGNWSDGPSAASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPAPASPERDPDQQDDERNEGQHEAINRPSLVMPSPPVPPPQPLWHQDLHQTGWSRHTMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGGETSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCASELIRGGGKCPLCRAPIVEVVRAYSIL* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1897 851 MobiDBLite consensus disorder prediction 652 698 - -
Mal1g1897 851 MobiDBLite consensus disorder prediction 52 78 - -
Mal1g1897 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 849 IPR013083 -
Mal1g1897 851 MobiDBLite consensus disorder prediction 40 78 - -
Mal1g1897 851 MobiDBLite consensus disorder prediction 125 147 - -
Mal1g1897 851 ProSiteProfiles Zinc finger RING-type profile. 799 838 IPR001841 -
Mal1g1897 851 MobiDBLite consensus disorder prediction 296 313 - -
Mal1g1897 851 SUPERFAMILY RING/U-box 798 844 - -
Mal1g1897 851 Coils Coil 728 748 - -
Mal1g1897 851 MobiDBLite consensus disorder prediction 179 237 - -
Mal1g1897 851 MobiDBLite consensus disorder prediction 296 333 - -
Mal1g1897 851 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 851 - -
Mal1g1897 851 CDD mRING-HC-C3HC5_NEU1 798 838 - -
Mal1g1897 851 Pfam Zinc finger, C3HC4 type (RING finger) 796 843 - -
Mal1g1897 851 MobiDBLite consensus disorder prediction 432 562 - -
Mal1g1897 851 MobiDBLite consensus disorder prediction 172 244 - -
Mal1g1897 851 MobiDBLite consensus disorder prediction 432 532 - -
Mal1g1897 851 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 851 - -
Mal1g1897 851 MobiDBLite consensus disorder prediction 668 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1897 Mal-Chr1 24693910 24699300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1897 799 845 C3H Transcription Factor Family AT3G06140 42.553 1.81e-06 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1897 1 24693910 24699300 Mal1g1897 1 24693910 24699300 ECH