Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1889 ATGTCAGGAGAGGATATTTGGTCATCCGTTGAAGAAGAATCTGGCGAATCTCTGCCTCCATTTGATAACAGGAGTGGCTACAATCCAAGAACAGGAATTTACCACTCTCTTATTAAGCTTGAAACCAAACATGAAATCCCAACAAAGCCAGACCTCAACACTGCAACTCTTGTGCTATCACAATTCCCACAAGCAGACCTTGCTGATGCAAGAATTGCATTCATTGACTTAAGTACTAATAATAGTGTAACCTACGGTGAGCTTCGCCGATCTGTTTACTCCCTTGCAACAGCTTTGTTCCATGGACTTGAGATTAGAAAAGGCGACGTCGTGTTTTTATTGTCTCCAAACTCAATCTTGTACTCAACTATATGTTTAGCTGTGTTATCAGTTGGTGCAATTCTTACCACAGCCAACCCTCTCAATACTAAGTCAGAAATCGCGAAGCAAGTTCATGATTCAGGTGCTAAACTAGCCATCTCAGCACCAGAAGAGTTACACAAATTGGTCCCAACTGGTGTTCCTACAATTCTCACCTCAAGTTCATCGAACGGAAATTTTTTATCAGTTGAAGAGTTAATAGAAGGCTGCTATGATTCACAAGAGTTGCCACATGTTCCTGTGGAGCAATCAGACACTGCCGCTATACTTTACTCTTCAGGGACTACTGGAGTAAGCAAAGGTGTTGTTTTGACACATGCAAATCTCATAACCATAATGAAACTGCTCTGCTGGTCTGCTGATGTATCTGCAGCACAAGACGATGTTTTCCTCGCCTTCATTCCAATGTTTCATGTCTACGGACTGATGTTCTTTGGATTTGGGTTGTTGTGCGTTGGTGTTACGACAGTTTTAATGCAAAAATATGATTTTCAAACCATGCTTGTCGCTATCGAGAAGCACAAAATTAATAACATACCAGCGGTGCCACCAGTGATCCACTCATTGGTGAAACATGCAAGTAAAGAAGGGTGTGATTTGTCTAGCCTAAGAAGGGTTGGCTCAGGTGCTGCACCTTTGAGTAAGGAAATGTCACTGGAGTTCAGAAAGCTGTTTCCTTGGGTTGAACTAAGGGCGGGTTATGGACTAACAGAAAGTTGTGGGGGAGCTACGTTTTTCGGGTCGGATAAAGATGCTAAAGCTCATCCAGAAGCATGTGGAAAGCTGATTCCAACTTTTTGTGCAAAAGTGATAGATATTGAAACAGGGAAGCCTTTGCCTCCTCACAAGGAAGGAGAGTTATGGCTGAAAAGCGGTGCTATTATGAAAGAATATCTAGGAAATATCGAGGCAACAACGGCAACAATTGATTCAGAAGGTTGGTTGAGGACAGGTGATCTTGGTTATATTGATGAGAATGGAATTGTCTACATAGTTGAACGAATAAAGGAGTTAATCAAGCACAAAGGCTATCAGGTAGCTCCTGCAGAACTGGAATCTGTGCTGCTAAGTCATCCCCTTATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGGCAGATACCAATTGCATATGTGGTGAGGGCGGCTGGTTCTCAACTCTCAGAAGACCAAGTCATTCAATTTGTTGCAGGCCAGGTGGCTCCCTATAAGAAAGTGAGACGGGTGAGTTTTATTGACAATATTCCAAGGTCAGCTGCTGGCAAGATATTGCGCAAGGATCTTGTTTTGCGAAGCAAATATCAGATTGTCTCTAAGTTATGA 1713 0.425 MSGEDIWSSVEEESGESLPPFDNRSGYNPRTGIYHSLIKLETKHEIPTKPDLNTATLVLSQFPQADLADARIAFIDLSTNNSVTYGELRRSVYSLATALFHGLEIRKGDVVFLLSPNSILYSTICLAVLSVGAILTTANPLNTKSEIAKQVHDSGAKLAISAPEELHKLVPTGVPTILTSSSSNGNFLSVEELIEGCYDSQELPHVPVEQSDTAAILYSSGTTGVSKGVVLTHANLITIMKLLCWSADVSAAQDDVFLAFIPMFHVYGLMFFGFGLLCVGVTTVLMQKYDFQTMLVAIEKHKINNIPAVPPVIHSLVKHASKEGCDLSSLRRVGSGAAPLSKEMSLEFRKLFPWVELRAGYGLTESCGGATFFGSDKDAKAHPEACGKLIPTFCAKVIDIETGKPLPPHKEGELWLKSGAIMKEYLGNIEATTATIDSEGWLRTGDLGYIDENGIVYIVERIKELIKHKGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPIAYVVRAAGSQLSEDQVIQFVAGQVAPYKKVRRVSFIDNIPRSAAGKILRKDLVLRSKYQIVSKL* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1889 570 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Mal1g1889 570 Gene3D - 464 565 IPR045851 -
Mal1g1889 570 CDD 4CL 46 558 - -
Mal1g1889 570 SUPERFAMILY Acetyl-CoA synthetase-like 61 559 - -
Mal1g1889 570 MobiDBLite consensus disorder prediction 1 26 - -
Mal1g1889 570 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Mal1g1889 570 Pfam AMP-binding enzyme 70 467 IPR000873 -
Mal1g1889 570 Gene3D - 41 463 IPR042099 -
Mal1g1889 570 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 19 569 - -
Mal1g1889 570 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 569 - -
Mal1g1889 570 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1889 Mal-Chr1 24606669 24608914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1889 24 563 Monolignol Biosynthesis Gene Families AT4G05160 43.818 2.59e-150 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1889 K10526 - gmx:100783104 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g3103 1 46984514 46987026 Mal1g1889 1 24606669 24608914 ECH
Mal1g1889 1 24606669 24608914 Mal1g1889 1 24606669 24608914 ECH