Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1883 ATGGCGCGAAAGAAGGTGAAACTTGCCTTTATCCCCGATAACTCAGCAAGGAAGGCAAGCTACAATAAAAGAAAGAAGGGTCTCATAAAGAAGGTAACTAAACTCACAACATTGTGTGATATTCCGGCTTGTGCTATAATTTCCAATCCATTTGATTCTCAAATAAAGGTTTGGCCAAATCCCGAAGCAGCCAATAAGGTAATTGAGAGGTATCAAAATTCATCTTTGATAGATGAAACCAGGAATCTGAGCCATGAGAGATTCATCATGCAAAGGATTGTTAAATCTAGGGACAAACTAAGAAAGTTGAAACACGACACTCGTGAGCAAAAGCTTAATCTTCTTATGTTCGAAAACTTGCATAACAACAATCTGTCTGATGACTTGATTCCTGAAGATCTGAAAGATCTTGATAAGCTTATTGAGAAGAAGTTGAAGGAGGTTAATGATAAGACTGATACGGTTGATTGGTGA 474 0.3776 MARKKVKLAFIPDNSARKASYNKRKKGLIKKVTKLTTLCDIPACAIISNPFDSQIKVWPNPEAANKVIERYQNSSLIDETRNLSHERFIMQRIVKSRDKLRKLKHDTREQKLNLLMFENLHNNNLSDDLIPEDLKDLDKLIEKKLKEVNDKTDTVDW* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1883 157 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal1g1883 157 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Mal1g1883 157 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 153 - -
Mal1g1883 157 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal1g1883 157 PANTHER MADS BOX PROTEIN 2 153 - -
Mal1g1883 157 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Mal1g1883 157 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal1g1883 157 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal1g1883 157 Gene3D - 13 114 IPR036879 GO:0003677|GO:0046983
Mal1g1883 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1883 Mal-Chr1 24482845 24483318 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1883 1 153 Type I MADS-box Gene Family AT5G48670 42.208 1.31e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g1883 SRF-TF 9.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1883 - - gmx:100792290 156.377