Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1882 ATGACGAGAAAGAAAGTGAAACTTGCTTTTATCCCCAATGACTCAGCAAGGAAGGCAAGCTACAACAAAAGAAAGAAGGGTCTCATAAAGAAGGTAACTGAACTCACAACACTTTGTGACGTTCCAGCTTGTGCTATAATTTCCAGTCCATTTGATTCTCAGACAGAGGTCTGGCCAAATCCAGAAGGAGCCAATAAGATAATTGAGAGGTATCAAAATTCATCTGTGAAAGATGAAACTAGAAATCTGAGCCATGAAAGATTCATCATGCAAACGATTGCTAAAACCAGGGATAAACTAAGAAAGTTGAAACACGACAATCGTGAGCAAGCATTGAATATTTTTATGCTCAGGAACTTGCAAAATGACAGCATGTTTGATAACGTGACTGCTGAAGAAGTGAAAGATCTGGATAAGCTTGTTGAGAAGAAGCTGAAGGAGGTGGATAATAAGATTGATACACTTGATTGA 471 0.3843 MTRKKVKLAFIPNDSARKASYNKRKKGLIKKVTELTTLCDVPACAIISSPFDSQTEVWPNPEGANKIIERYQNSSVKDETRNLSHERFIMQTIAKTRDKLRKLKHDNREQALNIFMLRNLQNDSMFDNVTAEEVKDLDKLVEKKLKEVDNKIDTLD* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1882 156 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal1g1882 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mal1g1882 156 Coils Coil 93 113 - -
Mal1g1882 156 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal1g1882 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal1g1882 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal1g1882 156 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Mal1g1882 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal1g1882 156 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mal1g1882 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Mal1g1882 156 PANTHER MADS BOX PROTEIN 2 154 - -
Mal1g1882 156 Coils Coil 141 156 - -
Mal1g1882 156 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1882 Mal-Chr1 24478983 24479453 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1882 1 148 Type I MADS-box Gene Family AT3G05860 41.611 2.02e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g1882 SRF-TF 2.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1882 - - gmx:100792290 166.007