Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1879 ATGGAACCAGCTCCTGAACCACAACCACAACAACAACAACAACTCTCTTTAGCCTCTAGAGAAGTCACAAACATCATCAAAGGCAAAAGAACCAAAAGGGTTAGGCCACAATCTCCTATACCATTCTCCATCACTGCTAATTCTTCAACTGGTGAAGGAGGTGGAGGAATAGGAGAAAGAGAAGATTGCAACAATGTTGATGATGTCAATATCAACAACAATAATAATAATAATACATCTCCAACAACTTCTTATGTGGCAGAAAAACAAGACAGTACTATTATTGATGAAGAATATGATATGGCAAATTGTTTGATCCTATTGGCACAAGGACAATCAAAGGAATCACCAAAGAACACTGATGAATTAGATGGTGGAATGATGAACTATACAAAATACAGCAGTAGAAAATTCATGGAAGCTGCTACTTTGGATTCTGGAAGAGCTGGTTACTATGTTTATGAATGCAAAACATGTAACAGAACATTTCCTTCATTTCAAGCTCTTGGTGGCCACAGAGCAAGTCATAAAAAGCCAAAAGCTTTAGCAATTGCTCAAGAGAAAAAGCACTTATTTGATGATGAAGATTTTCAATTCAAAACCAATCATAAATCAATTTCCCTTCAATTGAATAACAATGGTAAGGGAAATTCATATGGTGGAAATCACAACAACAACAACAATAACAAATCAAAGGTTCATGAGTGTTCCATTTGTGGTTCTGAATTCACATCTGGACAAGCACTAGGTGGACATATGAGGCGCCACCGCGCGCCGGTGGGGACCTCAGCTGCCAACACCACACTCTCTTTGACACCAATGGCTTTGGAACCTGATGAAGATCAACCTAGAAAGAAAAGGAATGTTTTGTCTTTGGATTTGGATCTCAACCTTCCTGCACCTGAAGATGATCACAGAGAATCTAAGTTTGCCTTTGCTTCCAAGCAACAACAACAACAACAAAATGGCCAAAAGCAACAACAACAGCAACAAACAAGTCTTGTTTTCTCTGCACCAGCTTTGGTGGATTGTCATTACTGA 1041 0.3881 MEPAPEPQPQQQQQLSLASREVTNIIKGKRTKRVRPQSPIPFSITANSSTGEGGGGIGEREDCNNVDDVNINNNNNNNTSPTTSYVAEKQDSTIIDEEYDMANCLILLAQGQSKESPKNTDELDGGMMNYTKYSSRKFMEAATLDSGRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKALAIAQEKKHLFDDEDFQFKTNHKSISLQLNNNGKGNSYGGNHNNNNNNKSKVHECSICGSEFTSGQALGGHMRRHRAPVGTSAANTTLSLTPMALEPDEDQPRKKRNVLSLDLDLNLPAPEDDHRESKFAFASKQQQQQQNGQKQQQQQQTSLVFSAPALVDCHY* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1879 346 MobiDBLite consensus disorder prediction 312 332 - -
Mal1g1879 346 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 19 346 - -
Mal1g1879 346 PANTHER ZINC FINGER PROTEIN ZAT5 19 346 - -
Mal1g1879 346 Gene3D Classic Zinc Finger 152 256 - -
Mal1g1879 346 MobiDBLite consensus disorder prediction 297 332 - -
Mal1g1879 346 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Mal1g1879 346 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
Mal1g1879 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 256 IPR013087 -
Mal1g1879 346 MobiDBLite consensus disorder prediction 24 65 - -
Mal1g1879 346 SUPERFAMILY beta-beta-alpha zinc fingers 153 256 IPR036236 -
Mal1g1879 346 Pfam C2H2-type zinc finger 153 179 - -
Mal1g1879 346 Pfam C2H2-type zinc finger 233 259 - -
Mal1g1879 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Mal1g1879 346 SMART c2h2final6 234 256 IPR013087 -
Mal1g1879 346 SMART c2h2final6 154 176 IPR013087 -
Mal1g1879 346 MobiDBLite consensus disorder prediction 38 52 - -
Mal1g1879 346 MobiDBLite consensus disorder prediction 262 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1879 Mal-Chr1 24444930 24445970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1879 18 346 C2H2 Transcription Factor Family AT5G04390 46.575 4.97e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g1879 zf-C2H2_6 8.2e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1879 1 24444930 24445970 Mal1g3129 1 48075219 48076121 ECH
Mal1g3129 1 48075219 48076121 Mal1g1879 1 24444930 24445970 ECH
Mal4g0878 4 10824964 10825863 Mal1g1879 1 24444930 24445970 ECH
Mal7g2008 7 72299394 72300287 Mal1g1879 1 24444930 24445970 ECH
Mal1g1879 1 24444930 24445970 Mal1g1879 1 24444930 24445970 ECH