Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1876 ATGACAAGAGGGAAATTGAAACTTGCCTTTATCTCCGATTACTCGGCAAGGAAGGCAAGCTACAATAAAAGAAAGAAGGGTCTCATAAAGAAGGTAACTGAACTCACAACTCTGTGTGATATTCCAGCTTGTGCTATAATTTCCAGTCCTTTTGATTCTCAGATAGAGGTCTGGCCAAATCCAGAAGGAGCCAATAAGATAATTGAGAGGTATCATAATTCATCTCTGATAGATGAAACCAAGAATGTGAGCCATGAAAGGTTCATCATGCAAACGATTGTTAAAGCCAGGGACAAACAAGAGCTGAATATTTTTATGCTCCGAAACTTGCAAAATAACAATATGTACGATGGCTTGACTGCTGAAGAACTGAAAGATCTTGGTAAGCTTGTTCAGAAGAAGTTAAAAGAGGTTGATGATAAGATTGATACACTAGATTGA 441 0.3787 MTRGKLKLAFISDYSARKASYNKRKKGLIKKVTELTTLCDIPACAIISSPFDSQIEVWPNPEGANKIIERYHNSSLIDETKNVSHERFIMQTIVKARDKQELNIFMLRNLQNNNMYDGLTAEELKDLGKLVQKKLKEVDDKIDTLD* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1876 146 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal1g1876 146 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal1g1876 146 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal1g1876 146 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal1g1876 146 PANTHER MADS BOX PROTEIN 2 144 - -
Mal1g1876 146 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal1g1876 146 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mal1g1876 146 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Mal1g1876 146 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 144 - -
Mal1g1876 146 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mal1g1876 146 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1876 Mal-Chr1 24427800 24428270 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1876 1 98 Type I MADS-box Gene Family AT3G05860 50.505 2.02e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g1876 SRF-TF 6.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1876 - - gmx:100792290 157.532