Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1855 ATGAACAACAACAGCACCTCGGAACCCCCACACAACAACAACGGTTTTGACGCAAATGGGTTCACATATATCTTAATACTTATATTTGGTCTCGTATTCTTGGTTCTCTCAATAATTGTTGCTTGTGTTCGACTTCGCAGTTCACGAAGTCGAAACATTCTCAATATTTTGTCCGGTTTTCCGCCACATCGTCAGGAAGACTCAATCATGGAACAAGGACTTCGTCATCATACCGACACAAGTTTTGAAGGATACCCGAAACTATTATACTCTCAAATTCAGAAGAATGGTTCTTCAACTTCAATTAGTTGCTCTATTTGCTTAGGAGACTATAAAGAAAGTGACATGTTGAGGTTACTTCCTGATTGTGGTCATCTTTATCATGCTGCTTGTGTTGATCCATGGCTCATGTTACATTCCACTTGTCCCATGTGTAGAAAATCATCGCTATAG 453 0.3974 MNNNSTSEPPHNNNGFDANGFTYILILIFGLVFLVLSIIVACVRLRSSRSRNILNILSGFPPHRQEDSIMEQGLRHHTDTSFEGYPKLLYSQIQKNGSSTSISCSICLGDYKESDMLRLLPDCGHLYHAACVDPWLMLHSTCPMCRKSSL* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1855 150 Pfam Ring finger domain 103 146 IPR001841 -
Mal1g1855 150 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 149 - -
Mal1g1855 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 149 IPR013083 -
Mal1g1855 150 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 149 IPR045899 -
Mal1g1855 150 SMART ring_2 104 145 IPR001841 -
Mal1g1855 150 CDD RING-H2_PA-TM-RING 108 146 - -
Mal1g1855 150 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Mal1g1855 150 SUPERFAMILY RING/U-box 103 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1855 Mal-Chr1 24217950 24218402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1855 4 150 C3H Transcription Factor Family AT5G06490 35.227 9.31e-26 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1855 - - gmx:102663718 188.348