Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1846 ATGGCGGGGAACTTCAGATTCATGATGGATCAGAAGGATATTGTGAGATTCTTGACTACAACTATAGATAGTTTCATTCAAGATAGGTTAATCAACAAAGAACAAAGGACACAACATAAAGATCAGTGTGCTGAGAGATTAGCAGCTGAAGATGGAAATGGTGAGAAAGAAACTGAGGTAGAATATTCTGATCAAGCAGTATTAGCAAATTTGGATTGGGGTATTGAGGCTCTTGAAGAAGCTATTAATACCTATAATATGGAAACTAAGCTTGCAAGATTAGATTATGCAGAGAAAATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAAACTGCTGGAGTACCAAATTCATATTTATCAGCTTGGGCACATTTAAATTTATCCTATTTATGGAAGTTGAGGAACAATATCAAGAGTTGTATTTATCATTCTCTTGAGATGTTCATTGTTGATCCTTTTTTCTCTAGGATTGATTTTGCTCCTGAGTTATGGAAAAACATGTTTCTTCCACATATGAGTTCGATTGTAGGGTGGTATTCAGAGGAAAGACATAAGCTTATGATGGAAGTGTTACCTGAATCTTCTGATTTTTCTTATACAGCTGATTTTGATAAGGTTTTCAATGAGTCTTTGGTATTTTCTATGAGGCCTAATCAACTTGAGAAATTGCAAAAACTTGAGCAGCTTTATGGAGAGTCTTTAGATGAGAACACAAGGCTATATGCAAAATATTATAATGATTGCATGAACACTGATTCTACCTCAAGCAAGAAGGTGGTTCCTATGATGCCGATTGCTGAACCGCCGATGACTCCTTTGCACGAGTTGAGCCGGTCTGTTCCTGATTTTGTAAAATTTGGTCCTATTTTGCCCAAGAGTTCTGGATTTTCTATGACATCAAGAAGACCTAATGATGGTTTAAATGAAACAACCAGAGAGAATATAGCCTCAAATTCCAACCATTCAAAAGGAGAAAAATCATCACTATGGGGTGCTAAGGAGAGCATAATTGAAGAGATCGAAGACGATTCGGATTCTGAGCATTATGATGCATCTGTGGATTCTGATAAAATCAATATTTTCTCACCTGAACTGAAGACAAATATCAAGGATGAGGATGTTGAACCAAAAGTATATCGATCAAACCAGAAGAATCAAATGAATTCTCCTAATATCTCTCCTATGGAATCTCCAAGAAGAGCTTCAAATTATTCATCTGCAAATCCTCCTATCCATAGGAAAAAAGAATCGAAGTTTCTGCGGTTACTATCTAATCGTTTTACAGGATCAACTGTTTCTGATCACTCTCTATCATCATCTCCAGATACAAGCTCCGATCATATTTTCAATGGCGATGAAGAACTTATGGTCTTGAATAATATTAAGAGGAAAAATGATAGTCAAACACCAAGTATGAATCAAGACAATGAGAACAGTCTGGTGCTGAATGACAGTTCACATTGTGAAAGTGATGATGGTTATCAAAGCTCTAGTTCATTTCCAAAATTAGAGAAACTGACTATTGGATCAAAACCACCCAAAGATTTTGTTTGTCCAATCACAGGTCAGATATTTAGTGATCCTGTCACACTTGAAACAGGCCAGACCTATGAAAGAAAAGCAATTCAAGAGTGGCTCGGAACAGGAAACACAACATGCCCCATCACGCGACAGCCTCTATCCGCAAACATCTTACCGAAAACAAACTATGTTTTGAAGAGATTAATAGTATCATGGAAAGAACAGAATCCTGAACTAGCTCAAGAATTCTCAACTTCTAACACACCAAGGGGTTCTTCATGCTCTCCCTCTGCAAAAGACATCACAATGGTTTCGAGTATACAAAGAACAACTGATTCACCAAGTCAGAAGTACAAAGACGATTATATTAGACAAAGGAACAACAGATTTACGAGGGTTGCTGTCGGTGCATCTCCAACTAGTGTGTTATCGCAAGCTGCAGTTGAAACGATTATAAATTCCTTGACACCTTACATCACAAGTCTATGTACATCAGAAAACTTGCAGGACTGTGAAGAAGCTGTATTGGAAATAGCAAGATTGTGGAAGGATTCAAAGACTGATCCTCAGATTCATTCTTATTTATCAAAGCCAACAGTCGTAAGTGGTTTAGTAGAAATTCTCTCGGCTTCTCTGAATAGAGAAGTTCTGAGAAGATCAATTTATATTCTTTCAGAGTTAATTTTTGCAGATGAAAGAGTTGGAGAAACACTAAACAGTGTAGATTCTGATTTTGATTGCTTGGCTACGCTACTTAAGAACGGTTTGGCTGAGGCTGCACTACTTATTTACCAACTAAGGCCAGTTTTTTCTCAGCTTTCAGAACATGAACTTATACCCTCTCTTATCCAAGTGATCCAGAACAAAAATGAGGATATAGATGATTTTCAGTTAGCTATAGACCCCAGAGCTGCCTCCATAGCAATTCTTGAGCAAATTTTAATGGGAGGGGATGAATATAACAGGTCTGTCAATGCTTCAAGTGTTATCTCAGCAAATGGAATTCCAACCATAGTTAAGTATTTGGACAGAACGGAAGGAAGGAGATCTGTAATTTCCATACTTCTGTGTTGTATGCAAGCGGAAAAAAGTTGCAAGAGCTCAATAGCAAATAGAATTGAATTGTCACCTGTTCTTGAATTATTTCACGCTGGAAATGATAGCGTGAGAGGAATCTGTGTGGAGTTTCTCTCGGAACTGGTTCGATTGAATAGAAGGACGTCCAGCAACCAGATATTACAGATAATCAAGGATGAGGGAGCTTTCAGTACAATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAACATCAAATTGCTGTTGCCAGTCTTCTTCTTCAACTTGATCTTTTGGCTGAGCCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTGATAGAGGCACTTTGGCAAAAGGACTTCTCAAATAATCAAATGAAGGCTTTAGATGCTTTACTATTTCTTATTGGACATGTTACTTCCTCAGGAAAGTCATATACTGAAGCTGGATTGCTGAAGATTGCAGGATTTGATCAACCTTACAATGTTTTAATGAAGGCCGAGCAATTGGGACACTCTGACAATGATTTCATGGAAACAATGGAGGATGAAAAAAATGCCATGAAGTCTTGGCAGAAAAGGGTAGCTTCTGTACTTTGCAATCATGAAAATGGCTCAATATTTCAAGCTTTGGAAGAATGCCTAAAGAGTAACTCCTTAAAAATGGCAAAATCTTGCCTTGTTCTTGCCACATGGCTCACACACATGCTATTTACTCTACCTGATACCGGTGTAAGGGACGTTGCTCGGAAATGCCTGCTTGAGGCACTTATGAATGTCCTCCAGTCATCCAAGAACCTGGAGGAAAAGATCCTAGCAACCCTAGCTTTGAAGTCTTTCATTAGTGATCCAACTGCTCATGAAGTACTTAGAGTTTATGCTAAAAGCATCTATAGAATCTTGAGGAAACTGAAGAAATATTCAACAGTTGCAGCTGATATTTTGAAAGCCTTACTAAACTTAAATTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAAGAAGTAGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTGCTTTCTTTGCTTTACCTCAATGGTCAGGTCTTGAGTGGACATGCTGACGGAACTATCAAGGTATGGGACGCAAGGAAGAGAATACCGCGAGTGATTCAAGAAACTCGCGAGCACAAGAAAGCTGTTACATCTCTTTGTTCTTCGGTCGATAAACTATACAGTTCTTCCTTGGACAAAACAATCCGGGTTTGGACAGTTAAACCTGACGGGATTAAATGTATAGATGTTTATGACGTTAAGGAGGCAGTGTATGAGCTAGCAGCCAATGCTGAATTGGCATGCTATGTAACTCAAGGAACAGGAGTTAAGGTTTTTAATTGGTTAGATGCTCCAAAGTTCATCAATTTCAACAAATATGTGAAATGCCTTGCTGTTTCTGGGGACAAACTGTATTGCGGTTGCTCTGGTTACAGCATACAAGAGGTTGACTTGTCCAAATATACATCAACTTCATTCTTTACTGGTACAAGAAAATTGTTGGGAAAACAAACCATACACTCCCTTCAAATTCATGACGATTTGCTCTTTGCTTGTGGTTCTTCTATTGATGCAACTGCAGGAAAGATATTTTCACTTTCCTCCAAAATGGTGGTGGGCTCGCTATCAACTGGACTCGACGTCCATCGTGTAGCTATCAACAGTGACTTCATATTTGCTGGTACAAAGTTTGGCACCATTGAAGTTTGGCTAAAAGATAAGTTCACCCGTGTTGCTTCCATTAAAATGGCTGGTGGTAACACAAAAATTACATCATTAGCGTCAGACGCTGATGGCATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTTTGGGCTTTGGATTAA 4470 0.3857 MAGNFRFMMDQKDIVRFLTTTIDSFIQDRLINKEQRTQHKDQCAERLAAEDGNGEKETEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIKSCIYHSLEMFIVDPFFSRIDFAPELWKNMFLPHMSSIVGWYSEERHKLMMEVLPESSDFSYTADFDKVFNESLVFSMRPNQLEKLQKLEQLYGESLDENTRLYAKYYNDCMNTDSTSSKKVVPMMPIAEPPMTPLHELSRSVPDFVKFGPILPKSSGFSMTSRRPNDGLNETTRENIASNSNHSKGEKSSLWGAKESIIEEIEDDSDSEHYDASVDSDKINIFSPELKTNIKDEDVEPKVYRSNQKNQMNSPNISPMESPRRASNYSSANPPIHRKKESKFLRLLSNRFTGSTVSDHSLSSSPDTSSDHIFNGDEELMVLNNIKRKNDSQTPSMNQDNENSLVLNDSSHCESDDGYQSSSSFPKLEKLTIGSKPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQPLSANILPKTNYVLKRLIVSWKEQNPELAQEFSTSNTPRGSSCSPSAKDITMVSSIQRTTDSPSQKYKDDYIRQRNNRFTRVAVGASPTSVLSQAAVETIINSLTPYITSLCTSENLQDCEEAVLEIARLWKDSKTDPQIHSYLSKPTVVSGLVEILSASLNREVLRRSIYILSELIFADERVGETLNSVDSDFDCLATLLKNGLAEAALLIYQLRPVFSQLSEHELIPSLIQVIQNKNEDIDDFQLAIDPRAASIAILEQILMGGDEYNRSVNASSVISANGIPTIVKYLDRTEGRRSVISILLCCMQAEKSCKSSIANRIELSPVLELFHAGNDSVRGICVEFLSELVRLNRRTSSNQILQIIKDEGAFSTMHTFLVYLQMAPMEHQIAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNNQMKALDALLFLIGHVTSSGKSYTEAGLLKIAGFDQPYNVLMKAEQLGHSDNDFMETMEDEKNAMKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFTLPDTGVRDVARKCLLEALMNVLQSSKNLEEKILATLALKSFISDPTAHEVLRVYAKSIYRILRKLKKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLLYLNGQVLSGHADGTIKVWDARKRIPRVIQETREHKKAVTSLCSSVDKLYSSSLDKTIRVWTVKPDGIKCIDVYDVKEAVYELAANAELACYVTQGTGVKVFNWLDAPKFINFNKYVKCLAVSGDKLYCGCSGYSIQEVDLSKYTSTSFFTGTRKLLGKQTIHSLQIHDDLLFACGSSIDATAGKIFSLSSKMVVGSLSTGLDVHRVAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGNTKITSLASDADGMMLFVGSSDGKIQVWALD* 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1846 1489 SMART Ubox_2 517 581 IPR003613 GO:0004842|GO:0016567
Mal1g1846 1489 SUPERFAMILY ARM repeat 660 1019 IPR016024 -
Mal1g1846 1489 ProSiteProfiles Trp-Asp (WD) repeats profile. 1455 1489 IPR001680 GO:0005515
Mal1g1846 1489 ProSiteProfiles U-box domain profile. 513 588 IPR003613 GO:0004842|GO:0016567
Mal1g1846 1489 Gene3D - 647 1021 IPR011989 -
Mal1g1846 1489 ProSiteProfiles Trp-Asp (WD) repeats profile. 1248 1280 IPR001680 GO:0005515
Mal1g1846 1489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 596 IPR013083 -
Mal1g1846 1489 MobiDBLite consensus disorder prediction 296 328 - -
Mal1g1846 1489 MobiDBLite consensus disorder prediction 371 415 - -
Mal1g1846 1489 Gene3D - 1181 1489 IPR015943 GO:0005515
Mal1g1846 1489 SUPERFAMILY WD40 repeat-like 1221 1488 IPR036322 GO:0005515
Mal1g1846 1489 Pfam WD domain, G-beta repeat 1458 1486 IPR001680 GO:0005515
Mal1g1846 1489 Pfam WD domain, G-beta repeat 1247 1277 IPR001680 GO:0005515
Mal1g1846 1489 Pfam WD domain, G-beta repeat 1220 1236 IPR001680 GO:0005515
Mal1g1846 1489 CDD RING-Ubox_PUB 518 560 IPR045210 -
Mal1g1846 1489 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1489 - -
Mal1g1846 1489 SUPERFAMILY RING/U-box 513 586 - -
Mal1g1846 1489 MobiDBLite consensus disorder prediction 296 330 - -
Mal1g1846 1489 SMART WD40_4 1241 1278 IPR001680 GO:0005515
Mal1g1846 1489 SMART WD40_4 1198 1236 IPR001680 GO:0005515
Mal1g1846 1489 SMART WD40_4 1446 1487 IPR001680 GO:0005515
Mal1g1846 1489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1455 1489 - -
Mal1g1846 1489 Pfam U-box domain 515 585 IPR003613 GO:0004842|GO:0016567
Mal1g1846 1489 ProSiteProfiles Trp-Asp (WD) repeats profile. 1223 1236 IPR001680 GO:0005515
Mal1g1846 1489 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1489 - -
Mal1g1846 1489 MobiDBLite consensus disorder prediction 382 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1846 Mal-Chr1 24152529 24159358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1846 505 585 U-box Gene Family AT1G49780 48.780 2.53e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1846 - - gmx:100776142 2408.25