Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1843 ATGACAACATCAGAAGAAACATCAAACTTGAAACTATTGAGCCAACATCTTTTAGAGGATGTATCAGACTCATTTTTCACCAATCTTAGTTCTATAAAACTTGATTACACATCATCATCACCAGAAATTGACTTGGATTCATATTTTTCAGAACCAAACAGATTTCTTGAAAGCCTTGGTTTTGAAGCTGATACAAAAGTTATTGACTTCACTTCTTCTCATAACAAGGTACGAAACACTAAAGCTGAAAGTCTCTTTGAGGAAACACAGATGAAGGAACAAAGATGTCATGGAACAAGGCATTACAGAGGAGTGAGGAGAAGGCCATGGGGAAAATATGCTGCAGAAATTCGTGATCCGACAAGGAAAGGAAGCAGGGTTTGGTTAGGAACATTTGACAGTGAGATTGATGCTGCTAAGGCTTATGATTGTGCAGCTTTCAGAATGAGGGGTCAGAAAGCTATATTGAATTTTCCTTTGGAGGCTGGTGAAGCTAATCCAAAGCCTAATAACTGTGGCAGGAAAAGGAGAATACATCAAAGATATGATGCTACAAGTTCAAGTTAA 567 0.3792 MTTSEETSNLKLLSQHLLEDVSDSFFTNLSSIKLDYTSSSPEIDLDSYFSEPNRFLESLGFEADTKVIDFTSSHNKVRNTKAESLFEETQMKEQRCHGTRHYRGVRRRPWGKYAAEIRDPTRKGSRVWLGTFDSEIDAAKAYDCAAFRMRGQKAILNFPLEAGEANPKPNNCGRKRRIHQRYDATSSS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1843 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 177 - -
Mal1g1843 188 SUPERFAMILY DNA-binding domain 101 161 IPR016177 GO:0003677
Mal1g1843 188 SMART rav1_2 101 165 IPR001471 GO:0003700|GO:0006355
Mal1g1843 188 MobiDBLite consensus disorder prediction 162 188 - -
Mal1g1843 188 ProSiteProfiles AP2/ERF domain profile. 101 159 IPR001471 GO:0003700|GO:0006355
Mal1g1843 188 Gene3D AP2/ERF domain 100 161 IPR036955 GO:0003700|GO:0006355
Mal1g1843 188 Pfam AP2 domain 101 151 IPR001471 GO:0003700|GO:0006355
Mal1g1843 188 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 177 - -
Mal1g1843 188 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Mal1g1843 188 PRINTS Ethylene responsive element binding protein signature 141 161 IPR001471 GO:0003700|GO:0006355
Mal1g1843 188 CDD AP2 101 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1843 Mal-Chr1 24131716 24132282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1843 1 177 AP2-EREBP Transcription Factor Family AT5G07580 42.408 2.39e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal1g1843 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1843 - - gmx:100499732 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1843 1 24131716 24132282 Mal1g1843 1 24131716 24132282 ECH