Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1805 ATGGCTGAAGAAATGGATAAAACTATTGGTTCTGAACAAGGTTGTAATTACAAGAGAAAACTAGATGATGAGTCTTCTTCTATGGTTACAGAAGATGGTTCCTTAAGTGTGGATGATGATTTTCCTCCCTATGAATTTACAAATCCGCAAAGCTTCGATTCGGCGGAATTAGGGTTGGGTTGTTGTACAGAAGAACCACAGTTGGGTGTGCTCGAGGTTGAAGATTGGAAAGATCCTATGGCAACTCAGCTTGAGGACTTACTAATGAGTAATTTGGAAGCAATTTTCAGTAATGCTATCAAGAAGGTTGTTGATTTAGGAGGCTACAGTCAAGAAATGGCTGAAATGGCTGTTTCAAGGAAGTCCTTATACACAGAAGGAGACCCTCTCACAAATATTGTTTACAGCACACTGAATACTTTGAAGGGGAAAGGTACTGAAACGACTGCAGACTTTGTATTTCAAAATACGCAGCAGTTACTGCATTATACTTTGGTAGAGATGGTCGGTGTACTTCGGGAATTAAAACCCTCCTTAACAGTAACTGAAGCAATGTGGGAGTTGCTGGTACATGACTTGAGTATTAGACGAGTCATTTCACCAGAAGATCAACCAAGTGGTGGTGATTCTAGCGAGCAAAGCTCTGACAAGTCTTCTGGTGCCCCATCAAAGTTAGATGTTCAATCTGATATGATTGGAAGTATGAGTGTGACAACTTTCACAAATATCTCCCAGGAAAGTAAAACAGAATCTCTTTCTCAGCTGATGAATTGCAGAAAACACCATAATGACTTTACGTCAGTACTTAGGCAGAAGTTCTTTCGTACAGAGAAACCTAAAGCTTGTGGAAAAGCGGGTGTTAAATTAGGAAAGCTTACAAGTGTAAGTGGTTTGATTGTTGAAAAAAAACTCAAGTCACCATCTGAAGTTCCAAATCAGAAAATGAAACGTGGCTCCTCAAATACAAAAGGAGTTAGTATAGCAGGACTATGCCGTATTTCAAGTTCAACCACTGATGATTCAGCTTTACCTGAAGGAGGTAGCGCTGCAAAATTACCGACAAAGGGTGCAAAATCTACTTCTCCCACAGTGAAAACAGCTAAACCAAAACCTAAGCTATGCTCCTCTGCCGCTCAAAAGGTTCAAAAATACTGTGCTAGTATTCCTTTTGATGAGGCTTCGGGCAAGTATGTCCCACGGAATGAGAAGGACGAACAAGTTTTGAAATTAGTATCTCGAGCTCAAGAATTGCAGGATGAGGTGCAAAGCTGGAACGACTGGGCCAATAAGAAGGTTATGCAGGTAGCAGATAAGCTTCGCAAGCTTCAGGCGGAGTCTAAATCTTTGAAAAAAGAAACTGAAGTATATAGAAAAGAAAGAAAATCTTTAGAAGAGAATGCTGAGAAGAGGATCACTGAAGTGGAGAATGCCATGGAAAATAATCAAAAGCAACTTGAGAGTGCCACTTCTTCCATACTCATTCTGGAGGCAAAGAAGTCCTTGCTAGAGAAAGAGTTGGTGTCTGCTAAGTCGTTGGCTGAAAAGTCAATGACAAGTCATCAACAAGCACTGGAGAGAGAGCAGATGACTATTCAACAAGCCCAGTTGTGGAAAACGGAGTTGGATTTGCTTCAGGATGAACTTGAGAAAGAGAAGGAAAAGTTAGCTAACTTGCATCTGGAGATAGAAAAGGGGAAAAATCTTCTAGCCAATACTGAGGGTAGAGTGAAAAAGGAGAGAGCTAAGACAGAAAAGATCCTCGCACAGGCTGCATATTTTAAAAAAGAAAGAGAGCAATCTGAAGCACTCATGAAAGTTGAGGAGGATGCCGTTAGGAAGAAGGCAGCTAATCAACTGCAGGAGTATGTGGAAAGCATGGTAAAGCTAGAGAAGGAGATAGCTATGCTAAGACTAAAATCTGGTTCCAAAATAAGTACTCCATCCTTGGTGAAAGAAAACAAGAAATCTGAGACGGTGAAGACGGGGAGCTCCCAAGACCAACCAGCAGGTGGAAGATTGAAGCGGGAGCATGAGTGTGTCATGTGCTTATCAGAGGAGAGGTCAGTTGTTTTTCTGCCATGCGCGCATCAGGTTTTGTGTCCGAATTGCAATGAGCTCCATGAGAAGCAAGGGATGAAGGAATGCCCTTCATGTAGGGCCACAATCGAATTTAGGATTCATGCCAAATTTCTTGGGCAGCAGTAG 2205 0.4168 MAEEMDKTIGSEQGCNYKRKLDDESSSMVTEDGSLSVDDDFPPYEFTNPQSFDSAELGLGCCTEEPQLGVLEVEDWKDPMATQLEDLLMSNLEAIFSNAIKKVVDLGGYSQEMAEMAVSRKSLYTEGDPLTNIVYSTLNTLKGKGTETTADFVFQNTQQLLHYTLVEMVGVLRELKPSLTVTEAMWELLVHDLSIRRVISPEDQPSGGDSSEQSSDKSSGAPSKLDVQSDMIGSMSVTTFTNISQESKTESLSQLMNCRKHHNDFTSVLRQKFFRTEKPKACGKAGVKLGKLTSVSGLIVEKKLKSPSEVPNQKMKRGSSNTKGVSIAGLCRISSSTTDDSALPEGGSAAKLPTKGAKSTSPTVKTAKPKPKLCSSAAQKVQKYCASIPFDEASGKYVPRNEKDEQVLKLVSRAQELQDEVQSWNDWANKKVMQVADKLRKLQAESKSLKKETEVYRKERKSLEENAEKRITEVENAMENNQKQLESATSSILILEAKKSLLEKELVSAKSLAEKSMTSHQQALEREQMTIQQAQLWKTELDLLQDELEKEKEKLANLHLEIEKGKNLLANTEGRVKKERAKTEKILAQAAYFKKEREQSEALMKVEEDAVRKKAANQLQEYVESMVKLEKEIAMLRLKSGSKISTPSLVKENKKSETVKTGSSQDQPAGGRLKREHECVMCLSEERSVVFLPCAHQVLCPNCNELHEKQGMKECPSCRATIEFRIHAKFLGQQ* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1805 734 MobiDBLite consensus disorder prediction 337 370 - -
Mal1g1805 734 Coils Coil 534 568 - -
Mal1g1805 734 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED 10 730 - -
Mal1g1805 734 MobiDBLite consensus disorder prediction 1 42 - -
Mal1g1805 734 SUPERFAMILY RING/U-box 672 725 - -
Mal1g1805 734 Coils Coil 432 505 - -
Mal1g1805 734 PANTHER OS05G0141500 PROTEIN 10 730 IPR046934 -
Mal1g1805 734 Coils Coil 612 639 - -
Mal1g1805 734 MobiDBLite consensus disorder prediction 204 228 - -
Mal1g1805 734 Pfam Zinc finger, C3HC4 type (RING finger) 676 723 - -
Mal1g1805 734 ProSiteProfiles Zinc finger RING-type profile. 679 719 IPR001841 -
Mal1g1805 734 MobiDBLite consensus disorder prediction 649 670 - -
Mal1g1805 734 Coils Coil 400 420 - -
Mal1g1805 734 Pfam Family of unknown function (DUF6592) 91 196 IPR046527 -
Mal1g1805 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 652 728 IPR013083 -
Mal1g1805 734 MobiDBLite consensus disorder prediction 200 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1805 Mal-Chr1 23639683 23642902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1805 679 726 C3H Transcription Factor Family AT1G73950 50.000 9.90e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1805 - - mtr:MTR_1g089740 1258.82