Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1767 ATGTCATTTCGGAGTATGATTATGGATAGGAAGGGATTTGACGTGAAATTTGGGTATGGTATGAGATCAAGATCACAGTCACACTGTGATCTTAATGTTGTTGCCGATGGTTCTTTGGTTGATGATGGATTGAAGCAGAGTTGTTGGGCTAACATGCCCTATGAGCTTTTGAGGGATGTGCTTGTGAGGATTGAAGTCTCGGATGATACTTGGCCGGCTCGGAAAAATGTCGTTGCTTGTGCCGGTGTTTGCAGGAGTTGGAGAGAAATTGTGAAGGAAATTGTTAAACCTCCTCAATTGTCCAGCAAGTTGACATTCCCTATCTCCTTGAAGCAGCCTGGTCCAAGGGGCTCTCTCATTCAGTGCTATATTAAACGAAGTCGCTGCGACCAAACATATTATCTTTTTCTCAGTTTAAACCAAGCCTCAACTGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTGCAACCCACACTGACTATGTCATTTCTCTAAACTTGGATGATGTATCAAGAAGGAGTAGCACCTATATTGGGAAGTTGAGATCAAACTTTCTGGGTACCAAATTTATAGTGTATGATGCACACCCTCCAATTTATGGAGACAAAGTTGCAAAGTCCCGCACCAACAGGCTAGTTAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCTGGCAACTATCCCATCGTGCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGGATTATGCAATGTGTGATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCGACGCAGACTCAATTTCTTCATAGCAGAGTTGATACTTCTCCATCTATCCCGTTCTTCAGATCAAAATCAACCCGCTCAGAGAATCTCCAATCAGTATTACCTTTGATAAGTCAAAACGAGGGAGAGCTGGTTTTAAAAAACAAGGCTCCTAGGTGGCATGAACAACTCCAATGCTGGTGTTTGAACTTCAATGGACGTGTGACAGTCGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCTAAAAATGGAGTTTCTGAGGAGGCTCAGGAAAGTGTTATTCTACAGTTTGGGAAAGTCGGAAAGGATGTGTTCACCATGGATTACCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1209 0.4417 MSFRSMIMDRKGFDVKFGYGMRSRSQSHCDLNVVADGSLVDDGLKQSCWANMPYELLRDVLVRIEVSDDTWPARKNVVACAGVCRSWREIVKEIVKPPQLSSKLTFPISLKQPGPRGSLIQCYIKRSRCDQTYYLFLSLNQASTDDGKFLLAARKCRRATHTDYVISLNLDDVSRRSSTYIGKLRSNFLGTKFIVYDAHPPIYGDKVAKSRTNRLVSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRVDTSPSIPFFRSKSTRSENLQSVLPLISQNEGELVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEEAQESVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1767 402 Gene3D Tubby Protein; Chain A 107 402 IPR025659 -
Mal1g1767 402 Pfam Tub family 110 397 IPR000007 -
Mal1g1767 402 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 401 - -
Mal1g1767 402 ProSitePatterns Tub family signature 2. 387 402 IPR018066 -
Mal1g1767 402 PANTHER TUBBY-RELATED 1 401 - -
Mal1g1767 402 SUPERFAMILY Tubby C-terminal domain-like 98 402 IPR025659 -
Mal1g1767 402 SUPERFAMILY F-box domain 40 92 IPR036047 GO:0005515
Mal1g1767 402 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Mal1g1767 402 PRINTS Tubby superfamily signature 314 331 IPR000007 -
Mal1g1767 402 PRINTS Tubby superfamily signature 332 348 IPR000007 -
Mal1g1767 402 PRINTS Tubby superfamily signature 359 378 IPR000007 -
Mal1g1767 402 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Mal1g1767 402 PRINTS Tubby superfamily signature 380 402 IPR000007 -
Mal1g1767 402 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Mal1g1767 402 Pfam F-box domain 49 95 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1767 Mal-Chr1 23101209 23104328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1767 1 402 TUB Transcription Factor Family AT2G47900 73.366 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mal1g1767 Tub 1.2e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1767 K19600 - gmx:100809257 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1767 1 23101209 23104328 Mal1g1767 1 23101209 23104328 ECH