Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1759 ATGGATTTGTACGGTCGGAGCCCCACCAGAAACGGATCCAACCCGCTTAATCAACATGAATGGCGTTCACCGGGTGCTGATGCTGCTGCTCTTGGTGAGTCGATGTGGCATTTAACGCTTGGTGGTAGTAGTGGTGGTGGTGAATCTTACCCGGAGAGACACGGTGTACCCAATTGTGCTTATTATATGAGAACTGGGTTTTGTGGATATGGTGGAAGGTGTCGATTCAATCACCCGCGTGATCGTGTTGCGGTTGCTGCTGCAGTAAGAGCTACTGGGGACTACCCAGAACGGCTCGGGGAACCTCCATGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGCGCGTCCTGTAAATTTCACCATCCCAAAAATGGAGGGGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCATTACGACCGGGTGAGAACGAGTGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGCATAACTTGTAAATTCCACCATCCTCAACCTGCTGGCACGTCGATGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCAAACGGTTCCTCTGCCTGAACAGTTTGGAGGAGCTTCTGCAAGTGTGAGAGTGGCTAGACCTCCTGTGTTACCCGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGAGTTGTTCCATTTCCTGGATGGAGTCCTTATTCGGCTCCTGTAAGCCCTGTGTTATCTCCTGGTGCGCAACCTGCTGTTGGGGCTACTTCTCTATACGGAGTAACCCAGTTATCGTCATCAACATCAGCTTTTGCTCGACCTTATACTCCTCTGCCCTCTTCTCCTGGCCCTGCTGGAAGCACTCTACAGGAAAAAGTATTTCCTGAAAGACCTGGCGAACCGGTCTGCCAATACTATCTAAGAACTGGGGACTGTAAATTTGGATTAGCTTGTCGATACCATCATCCACAGGACCAGGTTGCTGCACGACCACTTCTTAGTCCCTTTGGTCTTCCTCTACGCCCGGGTGTACAGCCTTGTTCATTTTATTTACAAAATGGGCACTGCAAATTTGGCTCGATGTGCAAGTTTGATCATCCGGTGGGGTCTATGAGATACAATCCATCAGCATCTTCTCTTATTGATGTTCCAGTTGCTCCATACCCAGTTGGGTCTTTACTATCTAACCTGATTCCTTCAACATCTTCAGAGTTTCGGCCTGAACTGAAGTCAGGGTCCAAAACCTTTCCAGCCATAATGCATTCTTCTGGAAATGGTTCTGGTACTTCTGTTGGTTTAATTTTTTCACAAGGTGGGTCTGTCTCACTGTCTGGTGCGCAACTCTCAAGCCAGAGTTCTGCTTCTTTGAACGGTAGCAGAAGCAGCAGACAGAGTGGCGAGATACATTGA 1422 0.4775 MDLYGRSPTRNGSNPLNQHEWRSPGADAAALGESMWHLTLGGSSGGGESYPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRVAVAAAVRATGDYPERLGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGENECSYYLKTGQCKFGITCKFHHPQPAGTSMPASAPQFYQQVQSQTVPLPEQFGGASASVRVARPPVLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSPGPAGSTLQEKVFPERPGEPVCQYYLRTGDCKFGLACRYHHPQDQVAARPLLSPFGLPLRPGVQPCSFYLQNGHCKFGSMCKFDHPVGSMRYNPSASSLIDVPVAPYPVGSLLSNLIPSTSSEFRPELKSGSKTFPAIMHSSGNGSGTSVGLIFSQGGSVSLSGAQLSSQSSASLNGSRSSRQSGEIH* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1759 473 SUPERFAMILY CCCH zinc finger 147 172 IPR036855 GO:0046872
Mal1g1759 473 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Mal1g1759 473 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Mal1g1759 473 SUPERFAMILY CCCH zinc finger 56 82 IPR036855 GO:0046872
Mal1g1759 473 SUPERFAMILY CCCH zinc finger 348 376 IPR036855 GO:0046872
Mal1g1759 473 ProSiteProfiles Zinc finger C3H1-type profile. 345 373 IPR000571 GO:0046872
Mal1g1759 473 PANTHER PROTEIN PHOSPHATASE RELATED 1 403 - -
Mal1g1759 473 ProSiteProfiles Zinc finger C3H1-type profile. 301 329 IPR000571 GO:0046872
Mal1g1759 473 SUPERFAMILY CCCH zinc finger 101 126 IPR036855 GO:0046872
Mal1g1759 473 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Mal1g1759 473 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Mal1g1759 473 SMART c3hfinal6 144 171 IPR000571 GO:0046872
Mal1g1759 473 SMART c3hfinal6 301 328 IPR000571 GO:0046872
Mal1g1759 473 SMART c3hfinal6 345 372 IPR000571 GO:0046872
Mal1g1759 473 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Mal1g1759 473 Gene3D - 300 382 - -
Mal1g1759 473 Gene3D - 97 182 - -
Mal1g1759 473 Gene3D - 47 93 - -
Mal1g1759 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 56 80 IPR000571 GO:0046872
Mal1g1759 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 347 371 IPR000571 GO:0046872
Mal1g1759 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 146 171 IPR000571 GO:0046872
Mal1g1759 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 328 IPR000571 GO:0046872
Mal1g1759 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Mal1g1759 473 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 1 403 - -
Mal1g1759 473 MobiDBLite consensus disorder prediction 1 22 - -
Mal1g1759 473 MobiDBLite consensus disorder prediction 447 473 - -
Mal1g1759 473 SUPERFAMILY CCCH zinc finger 304 331 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1759 Mal-Chr1 22888329 22892686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1759 19 437 C2H2 Transcription Factor Family AT5G18550 50.801 1.67e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal1g1759 zf-CCCH 5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1759 - - lja:Lj5g3v1665190.1 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1759 1 22888329 22892686 Mal1g1759 1 22888329 22892686 ECH