Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1757 ATGAGTGATAACAACAACAAAGGCAAATTAGTCCAAGACATAGAAGCCTTTAAGTACAACAACAATTTCACATCTCATGAACAAGATCATGGAGAAGTAATCAAAGAGCAAGATCGTTTGCTTCCAATAGCAAATGTTGGTCGGATCATGAAACAAATCTTGCCTCCAAATGCAAAAATCTCCAAAGAAGCTAAAGAAACCATGCAAGAATGTGTTTCTGAGTTTGTTAGTTTTGTAACTGGTGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACGGTGAATGGTGATGATGTTTGTTGGGCTTTGGGAAACTTAGGGTTTGATGATTATGCTGAGCCACTCAAAAGGGTAACAACAACTAACAACATTAACAGTGATGAAATTATTGAAACATATTACTATGATGGTAAGTCACAAAGTCCAAGGAAAGTAACTGTTGCTTTCTCTTCTATGTTCAATGATAGAAACCTAGCTACTAGTTGTTGA 492 0.3699 MSDNNNKGKLVQDIEAFKYNNNFTSHEQDHGEVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCWALGNLGFDDYAEPLKRVTTTNNINSDEIIETYYYDGKSQSPRKVTVAFSSMFNDRNLATSC* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1757 163 Gene3D Histone, subunit A 30 142 IPR009072 GO:0046982
Mal1g1757 163 SUPERFAMILY Histone-fold 37 120 IPR009072 GO:0046982
Mal1g1757 163 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 120 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mal1g1757 163 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Mal1g1757 163 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Mal1g1757 163 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Mal1g1757 163 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 104 IPR003958 -
Mal1g1757 163 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 18 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1757 Mal-Chr1 22862977 22863520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1757 27 143 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.521 3.04e-54 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mal1g1757 CBFD_NFYB_HMF 5.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1757 K08065 - fve:101303182 184.882