Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1688 ATGGGAAGAACTCCTTGTTGTGAGAAAGTTGGGTTGAAAAGGGGAAGATGGACAACAGAAGAAGATGAGATATTGTCAAAATACATTCAAGCCAATGGGGAAGGTTCTTGGAGGTCATTGCCCAAAAACGCAGGATTATTAAGATGCGGGAAGAGTTGTAGACTAAGATGGATTAACTATTTGAGAACCGACCTTAAAAGAGGGGACATTTCTGCTGAAGAGGAAGATACAATTGTGAAGCTGCACACTTCTTATGGCAACAGGTGGTCCATGATAGCTAGCCACTTGCCAGGAAGAACCGACAATGAAATTAAAAACCATTGGAATTCTCACCTCAGCAGAAAAATTTACAATTGCTCAAATCTCTCCACAACTATAGAGCCAAAGATCATCAATGTTCATCCTCCTAAACGCAAATATGGTAAAACAAGTCGTTGGGCTATGAAAAAGAACAAAAGCTACAAACCACAAACCGTCACTAATACTAGTAGTAAAGAAAATTATACTGAACCAGAAGAAGTTCAAATTCCACGCACCCCATCACTAGTTGATGACGTGGAAGTAAAAACAACACATGAAGGAGAGAAAGAAACAACGTATGAATCATGTGATGATATCTTAGGGCTAAGTGAATTATTGGATGGCATTAATGAAGACAGTGGAGCGTTGTGTATTAGTGATGACACGACAATGGCAAATTGCTTGATGCTGGATACATGTGGGTCTGTTTCAAATTTAAGTGAAGAGAGAGAAATGGTGGGTGGTGAAGAAAATGAAAGAACAACGAATGATGTTGGAGGAGATGTTTGTCTTAATTATAATTTGGTTTCATATGAGGACCCCGAGAGTAGTAGTGTGAATTACCAAAGCAGTTCAAACAATGGAGGGGAAAGTGGAGAATGGTCCTCAATGGGTTTGGAAATGGATGATAAATGGAATTGGGAGAGTGTGATGGAGTTTAGTGTTGTTGATGATAATAGTAATAGTAATAGGGAGCATAAAGAAAATCTTTTCAATTGGTTATGTGAAGATGATGATTGGGAAGGTGATAGTAAGATGTTGGGAGAGATAGATCCTCAGAAACAAGATGATTTGATTGCTTGGTTTCTCTCTTAA 1116 0.3862 MGRTPCCEKVGLKRGRWTTEEDEILSKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRTDLKRGDISAEEEDTIVKLHTSYGNRWSMIASHLPGRTDNEIKNHWNSHLSRKIYNCSNLSTTIEPKIINVHPPKRKYGKTSRWAMKKNKSYKPQTVTNTSSKENYTEPEEVQIPRTPSLVDDVEVKTTHEGEKETTYESCDDILGLSELLDGINEDSGALCISDDTTMANCLMLDTCGSVSNLSEEREMVGGEENERTTNDVGGDVCLNYNLVSYEDPESSSVNYQSSSNNGGESGEWSSMGLEMDDKWNWESVMEFSVVDDNSNSNREHKENLFNWLCEDDDWEGDSKMLGEIDPQKQDDLIAWFLS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1688 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mal1g1688 371 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 347 - -
Mal1g1688 371 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mal1g1688 371 CDD SANT 16 61 IPR001005 -
Mal1g1688 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mal1g1688 371 MobiDBLite consensus disorder prediction 150 170 - -
Mal1g1688 371 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal1g1688 371 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Mal1g1688 371 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal1g1688 371 PANTHER MYB TRANSCRIPTION FACTOR 2 347 - -
Mal1g1688 371 CDD SANT 71 112 IPR001005 -
Mal1g1688 371 Gene3D - 71 116 - -
Mal1g1688 371 MobiDBLite consensus disorder prediction 141 174 - -
Mal1g1688 371 Gene3D - 14 66 - -
Mal1g1688 371 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal1g1688 371 SMART sant 13 63 IPR001005 -
Mal1g1688 371 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1688 Mal-Chr1 21946027 21954014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1688 1 371 MYB Transcription Factor Family AT2G47460 41.667 1.02e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal1g1688 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1688 K09422 - gmx:100814275 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1688 1 21946027 21954014 Mal1g1688 1 21946027 21954014 ECH
Mal3g4678 3 126594379 126597125 Mal1g1688 1 21946027 21954014 PCT