Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1677 ATGCTTGAAACGAGTCACTCATCGCGAATCTTTCGCGGTGTTCATTTCGCTCTTTGTGGTTTCGACCATCTCACAGAAAACAAGATTCGATTCAAGCTTGTTAATGGCGGTGGAATTGATGCGGGGAAGAACACTGGAAATTGCACGCATGTTATCGTTGATAAGATTGTTTATGACGATCCTGTGTGTGTTGCTGCTAGAGAGGATGGAAAGACGTTGGTGACTGCGCTGTGGGTTGAACATAGTGCTGATATTGGAATGCCTGTTGATGCTTCCTCGGTTATGTACAGACCGCTTAAAGATTTGTATGGTATCCCGGGTGCAAAAGATTTGGTTGTCTGCTTGACTGGCTATCTGCGCCAGGATCGGGATGACATTATGACAATGGTTGGTCTGATGGGTGCACAGTTTTCTAAGCCGTTGGTGGCAAACAAGGTTACTCATCTTATATGCTACAAATTTGAAGGGGAGAAGTACGAGCTTGCCAAGAGACTGGCCACAATAAAGCTAGTTAATCATCGTTGGCTGGAAGATTGCTTGAAGGATTGGGTGCTTCTTTCTGAAGACAAATATAACAAGAGTGGTTTTGAACTGGAGATGATGGCGGAAGAGGCTAAGGATTCTGAGGATGAGGCTGAAGATTCCAAGCTGGGGCAATCAGGGGGAAGGAATATAAGCAAAAGTCCCCTTGGTTCAAAATTTGGCACAGCTGTGACTCATGGATTATCAAAATCTTTAAGAGAGGACACATTAAATGCTATCCCAGATACTACTGGTCCTCAAGTTTTGCCAAACACCAACAAGGGTAAAGACTCTTCAATTACTACAGGAAATAAGAACACTTCTGATCAAGGCGTAGACTTGCATAATATTGGTGACCTGAAGGATCTTGGCATTACTGGAAATACAAATTCATCTAGTCATCGACCTAATCTGCATGATGACACTTCGGAGACCAAGAAGTTGAGTTACACAAGATCCACTTCTGCAAGTGCTGATGGATTTGTACATTCAGATGAAAAGCTTGGTGCTACGAGTTATTCTAGGAAGAACCAAAAGGGGTTTACCTTTTCAAGGGTATTAGACGAATGTGAAGGCAGAGAAGGCAACAACCATGAAACTCCTTCCACCAAGGTAGAAAAGGGAAGTGAGGGAATCAAATCTGTCTGTGTTGAAGGTTCTGGGAAAGAAACCAGTGTTATTCAAGAGGATCATCGAAATAATTTATTGCCACAAAAGAGGACAAATGAAGCTGCTCCTTCTACCAAATTAAAATCAAGAAAGATCACTGGTAGTGCAAAATTGTCTATTGAAAGAACACCAATAGCAAATGGTAAATCTCAAGGATTGAAAGTGCCATCTGTGGTCGATGAGCCACCTGTGTCTGATGGCTCTCTTTCTGTTGACAAAGATGGTATAAATAACTCAAATACTGGCTTGATTTCTAAATCTGCAGCTTCTGCCTCCAACTCAGTGGCATTTGATAAGCCTATCTCAAGAAATGCAGAGTCTGCTCAATGTGATAATGCTTATCAGAATTCAGCACAAAAGGCTGTTCAGAGCTTAAGTAAGTCTAACATTAGTGGTGAGCCTGATATAACAGGTTTTGGAATTGGGCAAGGTGATAACGAAGCAGAGCAACTTAATGTCACTACAAATCTGGAGTGTTCATCACCAGGAAAGAAGTCAATGAATGAAGGATTTCCTGGTCTTGATGATTGGGATTTAAGCAACGAAGAAAGCAATAAGCCGATTAGAAAGTCGCCCCGCAAGAAATCAGCTGCCAAGCGAACGTTGGGTTCTAGACCCAGAAAAGGTGTTACTGCTAAAATGAAAAGTTCAGTTTGCTTGAATAAAACTACGCAGCGAGATGAAGGCGTAAGTTCTTCCAGTAGAAGCAAAGAAATAGCAACTTCCGGTGCTAAGGAGCGTCAGGCATCACCCCAAATCCTTGATGTTAACAAATTGATGGAGAAAAAAACGACAAGTGAATATGCAGAAGATGCTGGTGGCAGAACTGATTTTTTGGATGACGAAACAGAGGCTCCAGATGACAAATGTGAATCTGAGTTGGGAATGGCTCCTGATGAAGAATTGGTTCATCTTTCAAAAAAAGTAGACACCTCAACAGAAGAGAAGTTAGAAGCAGTTGACCATGATAAAAAATGTGAAGAATCAATGCCTCCTAAAATAGTCTCAAATGAAACTAAAAAGCAGAAACAACCTTCAGTGTTAGGTACAACCTCAAAGTTAAAAGTAAAGCATCAAGCGATAAAACGTCCTGCAAGTAAAACCAAGAAGACCACAGTTGCAAAGAAATTAGCGAAATCGGAAGCAGTATCTGGTGAGAAGATTCATAATGAGACAAGCGATGAGGCAGAGATAAAAATCCTGAAAGAAATGTCATTGTCTGTACCTTCTGATATAAGTGAGAACTCAAATGCACCAAAAAATAAGCCAAAGAATTCTATTGAAGAGGAGAAGGAAAATAGACCAAATGATGGAGAGCATGGTTTAGAGGAGAGAAGAGATGTTGGAAATCGAACTACTAAATCCAGTGTTAAGCCAGCAAGTATCAAGTCTAAGAAAATGAAACACGCTCCATCTATATCAGAATTTAAGGCAAGAGTAAAACCTGAAACCACATGTTTTATTTTAAGTGGGCATCGCCTACAGAGAAAGGAGTTTCAACAGGTAATCAAGCGTTTGAAAGGAAGGGTTTGCCGTGATTCTCATCAGTGGTCGTATCAGGCAACACACTTCATAGCCCCAGATCCTATACGGAGGACAGAGAAATTTTTTGCTGCTACTGCATCAGGAAGGTGGATTCTTAAAACGGATTTCTTAACTGCCAGTAGCCAGGCAGGAAAATTATTGCCAGAGGAGCCTTATGAGTGGCACAAAAATGGTCTCAGTGAGGATGGTGCCATCAATATGGAGGCTCCAAGAAAGTGGCGGCTATTGAAAGAAAGAACAGGTCATGGCGCCTTCTATGGGATGCGCATTGTTGTATATGGCGATTGTTTTGCTCCACCTTTGGATACTCTGAAGCGTGCAGTCAAAGCTGGAGATGGAACAATATTAGCAACGTCTCCTCCTTATACTCGCTTCCTTGGTACTGGGATTGACTATGCCATAGTTAGCCCAGGCATGCCACGCGTTGATTTGTGGGTCCAAGAGTTCTTGAAGCATGAGATACCTTGTGTTGTAGCGGACTACTTGGTCGAGTATGTGTGCAAGCCTGGGTTCTCCCTTGAGAGACATGTGTTGTATGGCACTAATTCTTGGGCAGATAGGTCATTTGCAAAACTTCAAAGTAAGGCAGAAGAGATTATTGAGGAGGTCATTCCTCATGAGGACTGCAATGATGGTGATGAGGATGATGATGATGATGATGATATAGCTTGCCAAGTATGTGGATCCCGGGAAAGAGGAGATGTCATGCTAATTTGTGGTGATGAACGTGGTTCCGTTGGCTGTGGGGTGGGTACCCATATCGATTGCTGCGATCCTCCGCTCACAGCTGTTCCCGAGGAGGATTGGTTTTGCCCAAAATGCAGTAGCTCCCAAAAATGCTCAAAACAAGCCAATAAAAGGAAAAAGGGTGCATTGTCTTCATCAAAGGCCAAGTGA 3633 0.4239 MLETSHSSRIFRGVHFALCGFDHLTENKIRFKLVNGGGIDAGKNTGNCTHVIVDKIVYDDPVCVAAREDGKTLVTALWVEHSADIGMPVDASSVMYRPLKDLYGIPGAKDLVVCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKRLATIKLVNHRWLEDCLKDWVLLSEDKYNKSGFELEMMAEEAKDSEDEAEDSKLGQSGGRNISKSPLGSKFGTAVTHGLSKSLREDTLNAIPDTTGPQVLPNTNKGKDSSITTGNKNTSDQGVDLHNIGDLKDLGITGNTNSSSHRPNLHDDTSETKKLSYTRSTSASADGFVHSDEKLGATSYSRKNQKGFTFSRVLDECEGREGNNHETPSTKVEKGSEGIKSVCVEGSGKETSVIQEDHRNNLLPQKRTNEAAPSTKLKSRKITGSAKLSIERTPIANGKSQGLKVPSVVDEPPVSDGSLSVDKDGINNSNTGLISKSAASASNSVAFDKPISRNAESAQCDNAYQNSAQKAVQSLSKSNISGEPDITGFGIGQGDNEAEQLNVTTNLECSSPGKKSMNEGFPGLDDWDLSNEESNKPIRKSPRKKSAAKRTLGSRPRKGVTAKMKSSVCLNKTTQRDEGVSSSSRSKEIATSGAKERQASPQILDVNKLMEKKTTSEYAEDAGGRTDFLDDETEAPDDKCESELGMAPDEELVHLSKKVDTSTEEKLEAVDHDKKCEESMPPKIVSNETKKQKQPSVLGTTSKLKVKHQAIKRPASKTKKTTVAKKLAKSEAVSGEKIHNETSDEAEIKILKEMSLSVPSDISENSNAPKNKPKNSIEEEKENRPNDGEHGLEERRDVGNRTTKSSVKPASIKSKKMKHAPSISEFKARVKPETTCFILSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAATASGRWILKTDFLTASSQAGKLLPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCFAPPLDTLKRAVKAGDGTILATSPPYTRFLGTGIDYAIVSPGMPRVDLWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGTNSWADRSFAKLQSKAEEIIEEVIPHEDCNDGDEDDDDDDDIACQVCGSRERGDVMLICGDERGSVGCGVGTHIDCCDPPLTAVPEEDWFCPKCSSSQKCSKQANKRKKGALSSSKAK* 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1677 1210 MobiDBLite consensus disorder prediction 613 645 - -
Mal1g1677 1210 CDD BRCT_TopBP1_rpt7 883 956 - -
Mal1g1677 1210 SUPERFAMILY FYVE/PHD zinc finger 1122 1195 IPR011011 -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 1194 1210 - -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 252 287 - -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 554 793 - -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 820 849 - -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 522 541 - -
Mal1g1677 1210 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 412 428 - -
Mal1g1677 1210 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1186 IPR044254 -
Mal1g1677 1210 SMART PHD_3 1135 1187 IPR001965 -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 252 332 - -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 732 750 - -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 366 428 - -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 657 679 - -
Mal1g1677 1210 ProSiteProfiles BRCT domain profile. 884 966 IPR001357 -
Mal1g1677 1210 Gene3D BRCT domain 1 95 IPR036420 -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 445 470 - -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 1186 1210 - -
Mal1g1677 1210 Pfam PHD-finger 1136 1188 IPR019787 -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 203 232 - -
Mal1g1677 1210 Gene3D BRCT domain 993 1095 IPR036420 -
Mal1g1677 1210 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Mal1g1677 1210 SUPERFAMILY BRCT domain 883 970 IPR036420 -
Mal1g1677 1210 SMART BRCT_7 8 86 IPR001357 -
Mal1g1677 1210 SMART BRCT_7 875 956 IPR001357 -
Mal1g1677 1210 SMART BRCT_7 994 1081 IPR001357 -
Mal1g1677 1210 SMART BRCT_7 106 183 IPR001357 -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 366 380 - -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 753 770 - -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 686 728 - -
Mal1g1677 1210 Pfam twin BRCT domain 111 175 IPR001357 -
Mal1g1677 1210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1119 1209 IPR013083 -
Mal1g1677 1210 SUPERFAMILY BRCT domain 8 92 IPR036420 -
Mal1g1677 1210 Gene3D BRCT domain 877 992 IPR036420 -
Mal1g1677 1210 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1186 - -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 806 867 - -
Mal1g1677 1210 Pfam BRCA1 C Terminus (BRCT) domain 887 951 IPR001357 -
Mal1g1677 1210 Gene3D BRCT domain 99 221 IPR036420 -
Mal1g1677 1210 ProSiteProfiles Zinc finger PHD-type profile. 1133 1189 IPR019787 -
Mal1g1677 1210 MobiDBLite consensus disorder prediction 771 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1677 Mal-Chr1 21882191 21894090 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1677 129 244 Core DNA Replication Machinery Family AT4G02110 62.931 1.42e-37 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal1g1677 BRCT 6.8e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1677 K10728 - jre:109009928 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1677 1 21882191 21894090 Mal1g1677 1 21882191 21894090 ECH