Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1640 ATGGATGTGAAAGAAATCCTCATTGGATTGCCCAATTGTTCCTTCCCACTTCAGGAGAAGAATTCTCGATCTCATAATCAGTCTCAGAGAAAACCCGATGACATTTCTCGTGAGGTATATGCACTTACTGGTGGATTCACACCTCTTATGCCTGCGGTTGATTTGTCTCTGTCGAAAAAAAGGCCTCTCTCGGACGAAAAAAAGGTCATTTGGAAATGGCTTCCTTTCAAAAATTCTGCTCGTAAAGATGATCTTCAGCTTCACCATTGGGTTCAAGCTGTAAATGGTGCTCCACCAACAGGGGACTATTCTTTTGCGAAGTATAACAAGTCTGTTGACATAACAAGATACACAGACGAGGAGTATGAGAAATATTTGGCAAATCCTAAATGGACCAAGGAGGAAACAGATCAACTGTTTGACTTGTGTGAGAGGTTTAATCTCCGATTTATTGTTATAGCTGATAGATTTCCTTCATCTCGAACTGTTGAAGAATTGAAGGATCGATATTATAGTGTATCTCAGGCTATATTTATTGCCAGGGATCCGTCTTCTAGGAATGTTGCAGTGGATCCACTTGTTCAGGAACCATATAACGTTTCACAAGAGATGGATCGGAAACGAGCTCTGTCTCTGATCCTCTCTCAAACAAAGCAACAAGAGCGAAGAGATGAAGAGGTGCTTGCCGAAGCAAAAAGAATTGCTGAATTACGCATAATGACCAAGGTTGCCCAAGAGTCTGAGTTGGATGTTGCTTCAAAGGCTGGTGCAGACGTTACAGAGAGGGCCACCCCTGGTGAAACTATATCTCCATCAAATGCACAACTTCCACCGATAGTTGTGCCTTCCACGATAACAACAAATAATGCATCTACCATAGCTTCTCTCCGCATGCTTCATGTCTATTCAAGAACCTATGCATTTGAACAAATGGTGCAATCTGCAAGCTCATCAGCTGGACTTCGGACTATCAAACGTGTTGATCAAACTTTGCAGGAACTTGGGGTCAATTTGAAACCAAGGGTTCCAACAAAAGCTGTTTGTGCAGAGCATCTAGAACTAAGAAATGAAATACTAACCTTGCTGAATCTTCAGAAACAGCTGCAAAATAAGGAGGCTGAAGGTTCATCTTTTCGTGATGGGTCACACTGCGAAACAATAGGAACACCAAAGCGTTTGCATCGTGGCGGAGATGAGGATCGGACATTTGTTCCAGATAACACAAGTTCTGGGGGGGAAAGAATTGGTAAAAGGGATCAAAAGCGCAAGTCTGGTGGACGACATTCAGAAGCTCCATCGTCACCAGCCCAATCAAAAAGACAGAAAAAACTAAAGGCTTCTGATCTTTAG 1350 0.4259 MDVKEILIGLPNCSFPLQEKNSRSHNQSQRKPDDISREVYALTGGFTPLMPAVDLSLSKKRPLSDEKKVIWKWLPFKNSARKDDLQLHHWVQAVNGAPPTGDYSFAKYNKSVDITRYTDEEYEKYLANPKWTKEETDQLFDLCERFNLRFIVIADRFPSSRTVEELKDRYYSVSQAIFIARDPSSRNVAVDPLVQEPYNVSQEMDRKRALSLILSQTKQQERRDEEVLAEAKRIAELRIMTKVAQESELDVASKAGADVTERATPGETISPSNAQLPPIVVPSTITTNNASTIASLRMLHVYSRTYAFEQMVQSASSSAGLRTIKRVDQTLQELGVNLKPRVPTKAVCAEHLELRNEILTLLNLQKQLQNKEAEGSSFRDGSHCETIGTPKRLHRGGDEDRTFVPDNTSSGGERIGKRDQKRKSGGRHSEAPSSPAQSKRQKKLKASDL* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1640 449 MobiDBLite consensus disorder prediction 412 428 - -
Mal1g1640 449 SMART sant 127 176 IPR001005 -
Mal1g1640 449 Pfam SANT/Myb-like domain of DAMP1 103 177 IPR032563 -
Mal1g1640 449 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 2 449 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Mal1g1640 449 CDD SANT_DMAP1_like 131 173 - -
Mal1g1640 449 Gene3D - 100 186 - -
Mal1g1640 449 Pfam DNA methyltransferase 1-associated protein 1 (DMAP1) 317 380 IPR008468 GO:0005634|GO:0045892
Mal1g1640 449 Coils Coil 354 374 - -
Mal1g1640 449 MobiDBLite consensus disorder prediction 385 402 - -
Mal1g1640 449 SUPERFAMILY Homeodomain-like 128 173 IPR009057 -
Mal1g1640 449 MobiDBLite consensus disorder prediction 373 449 - -
Mal1g1640 449 PANTHER BNAA04G26950D PROTEIN 2 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1640 Mal-Chr1 21460998 21468835 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mal1g1640 DMAP1 5.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1640 K11324 - pvy:116132595 630.172