Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1615 ATGAACGGAAAAATACTAGTCTCTGGTGTATCCATCATTCTTGTGGTGGGTGTTGCCATCGGTGTCGTCGTTGTTGTTAATAAAAAGGATGGTTCTGATCCTGCATTAGCAGCACACCAAAAAAATGTGAAAACAATGTGTCAAGCAACTGAAGATCAACAACTTTGTCATGAGACTCTTAACTCCGTGAAACCTACCAATTCCTCTGACCCATCAGCTTATTTAGCTGCTGCGGTTCAAGCAAGTGCTCAAAGTGTTATACTTGCCTTGAATATGAGTGATAGGTTAACAGTTGAACATGGCAAAGACAATCCTGGTGTCAAAATGGCCCTTGATGATTGCAAAGACTTAATGCAATTTGCTCTTGACAGTCTCGAATCATCGGCTAATTTGGTTCGCGATAACAACATTCAAGCCATTCATGATCAAACACCTGATTTTAGGAATTGGTTGAGTGCTGTTATCTCATACCAACAATCATGCATGGACGGATTTAACAATGGGACGGACGGTGAGGATCAGGTAAAGCAACAGTTGCAAACACAAAGTTTGGACAAAATGGAGAAACTAACCGGCATAACACTTGACATTGTAACTAGTATGTCTAACCTCCTTCAGACTTTCGACTTGAAGTTGGATTTGAATCCAGCTTCTCGTCGTCTTATGGAGGCTAATGAGGTTGATGAAGAAGGATTGCCCAAGTGGTTCTCGGCTGCAGATCGTAAGCTATTGTCGAGCAATGGTGGAGGCCCTCCACCAAACGCAGTTGTTGCTAAAGATGGTAGTGGTAAATTTAAAACAGTTAAAGAAGCTATTGACTCCTATCCTAAGGGATTCAAAGGCAGATACATTATCTATGTTAAGGCTGGGGTCTATGACGAGTACATCACCATTCCCAAAACATCAATAAATATTCTTATGTATGGTGACGGTCCTACAAAGACCATTATCACCGGTCACAAAAACTTCGTGGACGGCGTTAAGACAATGCAAACTGCCACTTTTGCAAATGTTGCAAATGGATTCATTGCAAAGTCAATGGCATTCGAGAACACAGCTGGACCAGCAAAACACCAAGCAGTGGCATTTAGAAACCAAGGAGACATGTCAGCTTTCTTCGATTGCGCCATGCACGGTTTCCAGGACACATTATACGTCCAAGCCAATCGTCAATTCTACCGCAACTGCGAAATCTCTGGTACCATAGATTTCATATTCGGCTCATCACCAACCCTAATTCAAAACTCTAGAATCATCGTGCGAAAGCCGGGACCTAGTCAATTCAACACAGTAACAGCAGACGGAACAAAACAACGAAACATGGCCACAGGAATAGTGATCCAGAATTGCGAAATCGTCCCAGAGGCGGCTTTGTTCCCAGTTAGGAACCAATTCAAATCATATTTGGGTAGGCCATGGAAAGCATATGCTAAGACAGTGGTTATGGAATCTAATATTGGTGATGTGATTGCACCAGAAGGGTGGACTCCATGGGCTGGGACTCAATTTCTTGATACATTATATTATGCTGAATATGCCAATACTGGACCTGGTGCTAATCTTAATGGAAGGGTTAAGTGGAAAGGTTACCATCCTAATATTAATAAAAATGAAGCCACTCAATTCACTGCAGGGCAATTCCTTAAAGCTGGACCTTCTGGAAGAGCTGATGATTGGTTGAAGGCTTCTGGTGTTCCTTATGCTATTGGATTTGAAAAAGCTTGA 1725 0.422 MNGKILVSGVSIILVVGVAIGVVVVVNKKDGSDPALAAHQKNVKTMCQATEDQQLCHETLNSVKPTNSSDPSAYLAAAVQASAQSVILALNMSDRLTVEHGKDNPGVKMALDDCKDLMQFALDSLESSANLVRDNNIQAIHDQTPDFRNWLSAVISYQQSCMDGFNNGTDGEDQVKQQLQTQSLDKMEKLTGITLDIVTSMSNLLQTFDLKLDLNPASRRLMEANEVDEEGLPKWFSAADRKLLSSNGGGPPPNAVVAKDGSGKFKTVKEAIDSYPKGFKGRYIIYVKAGVYDEYITIPKTSINILMYGDGPTKTIITGHKNFVDGVKTMQTATFANVANGFIAKSMAFENTAGPAKHQAVAFRNQGDMSAFFDCAMHGFQDTLYVQANRQFYRNCEISGTIDFIFGSSPTLIQNSRIIVRKPGPSQFNTVTADGTKQRNMATGIVIQNCEIVPEAALFPVRNQFKSYLGRPWKAYAKTVVMESNIGDVIAPEGWTPWAGTQFLDTLYYAEYANTGPGANLNGRVKWKGYHPNINKNEATQFTAGQFLKAGPSGRADDWLKASGVPYAIGFEKA* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1615 574 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Mal1g1615 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 202 IPR035513 -
Mal1g1615 574 Pfam Plant invertase/pectin methylesterase inhibitor 42 197 IPR006501 GO:0004857
Mal1g1615 574 SMART PMEI_2 38 197 IPR006501 GO:0004857
Mal1g1615 574 PANTHER PECTINESTERASE 3 572 - -
Mal1g1615 574 Gene3D - 252 571 IPR012334 -
Mal1g1615 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 202 IPR035513 -
Mal1g1615 574 SUPERFAMILY Pectin lyase-like 251 569 IPR011050 -
Mal1g1615 574 CDD PMEI-like_3 45 203 - -
Mal1g1615 574 TIGRFAM PME_inhib: pectinesterase inhibitor domain 21 200 IPR006501 GO:0004857
Mal1g1615 574 PANTHER PECTINESTERASE 3 572 - -
Mal1g1615 574 Pfam Pectinesterase 254 549 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1615 Mal-Chr1 21097770 21099583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1615 41 574 Carbohydrate Esterase AT2G26450 41.078 4.05e-140 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1615 K01051 - gmx:100775246 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1615 1 21097770 21099583 Mal1g1615 1 21097770 21099583 ECH
Mal3g4747 3 127454731 127456717 Mal1g1615 1 21097770 21099583 PCT