Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1598 ATGGGAAAAGGTTCTACTTCTTCCTCTTCTTCCAACAGCAGAAGAAGGAAACATAATTCCTCTAATGTTTCATCCTCCATCACACACCAAAATCCTGATCAACAACATCTTTGTCCTGATCTTAACCTTCGATTGAGCATTTCCACTACTCAACAATATGTTGATTATTCCACTTCAAGGGGACATTGGCAACCAATTCAGCAACAAGGTGGTGAAGTAAATGATTGTAGTGATTACAACAGTGCCTTCTTTGTGAAGGTCTATATGGAAGGCATTCCAATTGGGAGAAAACTCAATTTATTAGCTCATAATAGCTATGAAGAGTTAGTGAATACTCTTGAACAAATGTTCGACACTACCATTCTATGGGGGACTGAAATGGATGGAGTACAATCTGAGAGATGTCATGTGCTAACTTATGAAGATGGAGAAGGAGACTTGATAATGGTTGGGGATGTCCCTTGGGAGATGTTCTTATCATCTGTGAAGAGGTTGAAGATCACAAGGGTCGATGCATTCGGGTTTTAA 528 0.3958 MGKGSTSSSSSNSRRRKHNSSNVSSSITHQNPDQQHLCPDLNLRLSISTTQQYVDYSTSRGHWQPIQQQGGEVNDCSDYNSAFFVKVYMEGIPIGRKLNLLAHNSYEELVNTLEQMFDTTILWGTEMDGVQSERCHVLTYEDGEGDLIMVGDVPWEMFLSSVKRLKITRVDAFGF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1598 175 Gene3D - 77 174 - -
Mal1g1598 175 SUPERFAMILY CAD & PB1 domains 78 167 - -
Mal1g1598 175 MobiDBLite consensus disorder prediction 1 35 - -
Mal1g1598 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 174 IPR003311 GO:0005634|GO:0006355
Mal1g1598 175 PANTHER AUXIN-INDUCED PROTEIN 5 174 - -
Mal1g1598 175 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
Mal1g1598 175 Pfam AUX/IAA family 74 169 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1598 Mal-Chr1 20865141 20866148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1598 64 167 B3 DNA Binding Superfamily AT4G23980 31.731 1.14e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mal1g1598 AUX_IAA 2.8e-30 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1598 K14484 - gmx:100784866 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1598 1 20865141 20866148 Mal1g1598 1 20865141 20866148 ECH
Mal3g4766 3 127637576 127638376 Mal1g1598 1 20865141 20866148 PCT