Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mal1g1572 | ATGGCTTCCATATCCACTGCAATTGGAACTTCTTCCATTAACAAAACACCAACTTCCTTTTCACTCTACAACAGCACTTATCGTCTCAACACCCTTCTCCGTCTCCGTCCCCGTCCCAAAAACAAAACCCCCACAGTTTCCTTCGTTATTTCTGCTATTGCCACCCCCAACACTCCTATCGTCACCCCTCAAGAAACATTCAAGGGTTTTGCTTTCGATGACTCTACCGATGTCCCTGTTGCCGTTAGCGAATACGAGCTTGACATTTCCAAGCTTCGTTTTCCTTCTCAGCTCGTCAACTCGCTTCAGAGGCGTGGAATTACCAGTCTTTTCCCTATTCAGAGAGCTGTGTTGCTGCCTGCAATAGAAGGTAGAGATATCATTGCCCGTGCAAAGACTGGGACTGGGAAGACATTAGCATTTGGAATCCCAATTATCAAGGGTCTCATTGAGAATGAACAAAGCAATATGAGGCGGTCTGGTCGGCTTCCTAAAGTATTAGTCCTTGCACCTACTAGGGAGTTAGCGAAGCAAGTAGAGAAGGAGATAAAAGAATCTGCACCTTATTTAAACACAGTTTGTGTTTATGGTGGTGTTTCTTATGATATTCAGAGGAATGCACTTTCACATGGTGTTGATGTTGTGGTTGGAACACCTGGGAGACTTATTGACCTGATAAATGGGAGAACCCTAAAACTTAGTGAAATTCAGTATTTGGTACTTGATGAAGCTGATCAGATGCTTGCGGTTGGGTTTGAGGAGAATGTGGAAGAAATTTTAGAAACGATCCCGTCTCAGCGGCAGATCATGCTTTTCTCTGCAACCATGCCGGGTTGGGTCAAGAAGTTGTCAAGAAAACATTTGAACAATCCATTGACTATTGACTTGATCGGGGACAGAGAAGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTGTATCAGCCACTGCAACATCAAAGCGGAGAATTCTTTATGGTCTTATAAGTGCCTATGCAAACGGTGGGAAGACTATTGTTTTCACACGGACAAAAAGGGACGCGGATGAAATATCATGGTCATTATCAAATAGCATAGCTTCTAAAGCACTACACGGAGATATCTCTCAGTATCAGAGAGAGAATACATTGAATGGTTTTCGGCAAGGAAGATTCACAGTGCTTGTTGCTACTGATGTTGCTTCTCGTGGACTAGATATCCCCAATGTTGATTTGATTATACATTATGAACTTCCCGATGGTCCCGAGACTTTTGTACATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAGGGTACAGCTGTTGTAATGTACACCACTTCCCAGAAAAGAACTGTTATGTCCCTTGAGCGCGACGTAGGCTCCAGATTTGAATTTATTAGTCCACCACCTATGCAAGATTTACCCGAATCATCTACCAGGCAAGTTGTTCCTACACTTGATAGAGATAGAAGTAATCAGAGAGGATCTAGGCATCAGAGTGGTTTTAGAACCGGTGGGGATGACTGGCTAACTGGAGGTGGACGATCAAGTGGGTATTCTGGAGGTGGACAATCAAGTGGGTATTCGTCATCAAACAGATCTTCTTCATCAGGTTCTAGGGATCGGAGAGGTTTTAAAACTGGTGGTGATGACTGGTTAATTGGAGGTGGACTATCAAGCGGGTATTCGTCATCAAACAGAAGTAGTTATGGAGGGGTCTGTGTTAGTTGTGGACAAACAGGGCATCGGGCGTCAGATTGTCCCAATTAA | 1749 | 0.4408 | MASISTAIGTSSINKTPTSFSLYNSTYRLNTLLRLRPRPKNKTPTVSFVISAIATPNTPIVTPQETFKGFAFDDSTDVPVAVSEYELDISKLRFPSQLVNSLQRRGITSLFPIQRAVLLPAIEGRDIIARAKTGTGKTLAFGIPIIKGLIENEQSNMRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYDIQRNALSHGVDVVVGTPGRLIDLINGRTLKLSEIQYLVLDEADQMLAVGFEENVEEILETIPSQRQIMLFSATMPGWVKKLSRKHLNNPLTIDLIGDREEKLAEGIKLYAVSATATSKRRILYGLISAYANGGKTIVFTRTKRDADEISWSLSNSIASKALHGDISQYQRENTLNGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGTAVVMYTTSQKRTVMSLERDVGSRFEFISPPPMQDLPESSTRQVVPTLDRDRSNQRGSRHQSGFRTGGDDWLTGGGRSSGYSGGGQSSGYSSSNRSSSSGSRDRRGFKTGGDDWLIGGGLSSGYSSSNRSSYGGVCVSCGQTGHRASDCPN* | 583 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mal1g1572 | 582 | CDD | DEADc | 98 | 295 | - | - | |
Mal1g1572 | 582 | Gene3D | - | 311 | 489 | IPR027417 | - | |
Mal1g1572 | 582 | MobiDBLite | consensus disorder prediction | 510 | 531 | - | - | |
Mal1g1572 | 582 | Pfam | DEAD/DEAH box helicase | 111 | 283 | IPR011545 | GO:0003676|GO:0005524 | |
Mal1g1572 | 582 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 118 | 294 | IPR014001 | - | |
Mal1g1572 | 582 | SUPERFAMILY | Retrovirus zinc finger-like domains | 553 | 582 | IPR036875 | GO:0003676|GO:0008270 | |
Mal1g1572 | 582 | Gene3D | - | 88 | 298 | IPR027417 | - | |
Mal1g1572 | 582 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 323 | 468 | IPR001650 | - | |
Mal1g1572 | 582 | MobiDBLite | consensus disorder prediction | 456 | 563 | - | - | |
Mal1g1572 | 582 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 3, CHLOROPLASTIC ISOFORM X1 | 36 | 485 | - | - | |
Mal1g1572 | 582 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 165 | 448 | IPR027417 | - | |
Mal1g1572 | 582 | CDD | SF2_C_DEAD | 308 | 437 | - | - | |
Mal1g1572 | 582 | SMART | ultradead3 | 106 | 311 | IPR014001 | - | |
Mal1g1572 | 582 | ProSiteProfiles | Zinc finger CCHC-type profile. | 567 | 582 | IPR001878 | GO:0003676|GO:0008270 | |
Mal1g1572 | 582 | Pfam | Zinc knuckle | 566 | 582 | IPR001878 | GO:0003676|GO:0008270 | |
Mal1g1572 | 582 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 36 | 485 | - | - | |
Mal1g1572 | 582 | MobiDBLite | consensus disorder prediction | 465 | 482 | - | - | |
Mal1g1572 | 582 | SMART | helicmild6 | 348 | 428 | IPR001650 | - | |
Mal1g1572 | 582 | SMART | c2hcfinal6 | 566 | 582 | IPR001878 | GO:0003676|GO:0008270 | |
Mal1g1572 | 582 | Pfam | Helicase conserved C-terminal domain | 320 | 428 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mal1g1572 | Mal-Chr1 | 20561753 | 20566171 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mal1g1572 | 113 | 450 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 36.047 | 4.80e-64 | 214 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mal1g1572 | - | K16911 | gmx:100815040 | 659.448 |