Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1572 ATGGCTTCCATATCCACTGCAATTGGAACTTCTTCCATTAACAAAACACCAACTTCCTTTTCACTCTACAACAGCACTTATCGTCTCAACACCCTTCTCCGTCTCCGTCCCCGTCCCAAAAACAAAACCCCCACAGTTTCCTTCGTTATTTCTGCTATTGCCACCCCCAACACTCCTATCGTCACCCCTCAAGAAACATTCAAGGGTTTTGCTTTCGATGACTCTACCGATGTCCCTGTTGCCGTTAGCGAATACGAGCTTGACATTTCCAAGCTTCGTTTTCCTTCTCAGCTCGTCAACTCGCTTCAGAGGCGTGGAATTACCAGTCTTTTCCCTATTCAGAGAGCTGTGTTGCTGCCTGCAATAGAAGGTAGAGATATCATTGCCCGTGCAAAGACTGGGACTGGGAAGACATTAGCATTTGGAATCCCAATTATCAAGGGTCTCATTGAGAATGAACAAAGCAATATGAGGCGGTCTGGTCGGCTTCCTAAAGTATTAGTCCTTGCACCTACTAGGGAGTTAGCGAAGCAAGTAGAGAAGGAGATAAAAGAATCTGCACCTTATTTAAACACAGTTTGTGTTTATGGTGGTGTTTCTTATGATATTCAGAGGAATGCACTTTCACATGGTGTTGATGTTGTGGTTGGAACACCTGGGAGACTTATTGACCTGATAAATGGGAGAACCCTAAAACTTAGTGAAATTCAGTATTTGGTACTTGATGAAGCTGATCAGATGCTTGCGGTTGGGTTTGAGGAGAATGTGGAAGAAATTTTAGAAACGATCCCGTCTCAGCGGCAGATCATGCTTTTCTCTGCAACCATGCCGGGTTGGGTCAAGAAGTTGTCAAGAAAACATTTGAACAATCCATTGACTATTGACTTGATCGGGGACAGAGAAGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTGTATCAGCCACTGCAACATCAAAGCGGAGAATTCTTTATGGTCTTATAAGTGCCTATGCAAACGGTGGGAAGACTATTGTTTTCACACGGACAAAAAGGGACGCGGATGAAATATCATGGTCATTATCAAATAGCATAGCTTCTAAAGCACTACACGGAGATATCTCTCAGTATCAGAGAGAGAATACATTGAATGGTTTTCGGCAAGGAAGATTCACAGTGCTTGTTGCTACTGATGTTGCTTCTCGTGGACTAGATATCCCCAATGTTGATTTGATTATACATTATGAACTTCCCGATGGTCCCGAGACTTTTGTACATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAGGGTACAGCTGTTGTAATGTACACCACTTCCCAGAAAAGAACTGTTATGTCCCTTGAGCGCGACGTAGGCTCCAGATTTGAATTTATTAGTCCACCACCTATGCAAGATTTACCCGAATCATCTACCAGGCAAGTTGTTCCTACACTTGATAGAGATAGAAGTAATCAGAGAGGATCTAGGCATCAGAGTGGTTTTAGAACCGGTGGGGATGACTGGCTAACTGGAGGTGGACGATCAAGTGGGTATTCTGGAGGTGGACAATCAAGTGGGTATTCGTCATCAAACAGATCTTCTTCATCAGGTTCTAGGGATCGGAGAGGTTTTAAAACTGGTGGTGATGACTGGTTAATTGGAGGTGGACTATCAAGCGGGTATTCGTCATCAAACAGAAGTAGTTATGGAGGGGTCTGTGTTAGTTGTGGACAAACAGGGCATCGGGCGTCAGATTGTCCCAATTAA 1749 0.4408 MASISTAIGTSSINKTPTSFSLYNSTYRLNTLLRLRPRPKNKTPTVSFVISAIATPNTPIVTPQETFKGFAFDDSTDVPVAVSEYELDISKLRFPSQLVNSLQRRGITSLFPIQRAVLLPAIEGRDIIARAKTGTGKTLAFGIPIIKGLIENEQSNMRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYDIQRNALSHGVDVVVGTPGRLIDLINGRTLKLSEIQYLVLDEADQMLAVGFEENVEEILETIPSQRQIMLFSATMPGWVKKLSRKHLNNPLTIDLIGDREEKLAEGIKLYAVSATATSKRRILYGLISAYANGGKTIVFTRTKRDADEISWSLSNSIASKALHGDISQYQRENTLNGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGTAVVMYTTSQKRTVMSLERDVGSRFEFISPPPMQDLPESSTRQVVPTLDRDRSNQRGSRHQSGFRTGGDDWLTGGGRSSGYSGGGQSSGYSSSNRSSSSGSRDRRGFKTGGDDWLIGGGLSSGYSSSNRSSYGGVCVSCGQTGHRASDCPN* 583
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1572 582 CDD DEADc 98 295 - -
Mal1g1572 582 Gene3D - 311 489 IPR027417 -
Mal1g1572 582 MobiDBLite consensus disorder prediction 510 531 - -
Mal1g1572 582 Pfam DEAD/DEAH box helicase 111 283 IPR011545 GO:0003676|GO:0005524
Mal1g1572 582 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 294 IPR014001 -
Mal1g1572 582 SUPERFAMILY Retrovirus zinc finger-like domains 553 582 IPR036875 GO:0003676|GO:0008270
Mal1g1572 582 Gene3D - 88 298 IPR027417 -
Mal1g1572 582 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 468 IPR001650 -
Mal1g1572 582 MobiDBLite consensus disorder prediction 456 563 - -
Mal1g1572 582 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 3, CHLOROPLASTIC ISOFORM X1 36 485 - -
Mal1g1572 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 448 IPR027417 -
Mal1g1572 582 CDD SF2_C_DEAD 308 437 - -
Mal1g1572 582 SMART ultradead3 106 311 IPR014001 -
Mal1g1572 582 ProSiteProfiles Zinc finger CCHC-type profile. 567 582 IPR001878 GO:0003676|GO:0008270
Mal1g1572 582 Pfam Zinc knuckle 566 582 IPR001878 GO:0003676|GO:0008270
Mal1g1572 582 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 36 485 - -
Mal1g1572 582 MobiDBLite consensus disorder prediction 465 482 - -
Mal1g1572 582 SMART helicmild6 348 428 IPR001650 -
Mal1g1572 582 SMART c2hcfinal6 566 582 IPR001878 GO:0003676|GO:0008270
Mal1g1572 582 Pfam Helicase conserved C-terminal domain 320 428 IPR001650 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mal1g1572 Mal-Chr1 20561753 20566171 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1572 113 450 Eukaryotic Initiation Factors Gene Family AT1G72730 36.047 4.80e-64 214
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1572 - K16911 gmx:100815040 659.448
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1572 1 20561753 20566171 Mal3g4786 3 127856788 127862188 ECH
Mal1g1572 1 20561753 20566171 Mal1g1572 1 20561753 20566171 ECH
Mal3g4786 3 127856788 127862188 Mal1g1572 1 20561753 20566171 PCT