Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1559 ATGGGAAGACACTCTTGCTGCTACAAGCAGAAATTAAGGAAAGGTCTTTGGTCTCCAGAGGAAGATGAGAAACTTCTGAATTACATTACCAAACATGGTCATGGATGTTGGAGTTCAGTCCCCAAACTAGCAGGTTTGCAAAGGTGTGGGAAGAGTTGCAGGTTAAGATGGATAAATTACTTGAGGCCTGATTTGAAAAGAGGAGCATTCTCACAACAAGAAGAGAATTTGATCATTGAACTCCATGCAGTCCTTGGAAACAGATGGTCTCAAATTGCAGCACAATTACCAGGAAGAACAGATAATGAGATTAAAAATCTATGGAATTCATGTCTCAAGAAGAGGTTGAGACAAAGTGGCATTGATCCAAACACACATAAACCACTTTCTGAGGTTGAAAATGACAATGAAAAATCAAACAAAACCAATCAAAAAGCCTCAGTTTCATCCAATGAAGTTATGAGTATGGTAATTGAACCTACAAAACCTTCTTCAATAGAAGGTTACCCTCTAGAAGTTTCTACTACCTCAAAGATCAACAACAGTAGTAGTAGCAGCCATGAATTATTCCTAGATACCAGGTTTGGTGCCACCACAAGTTATTTTTCTTTCCAGAATTTGAACTATGGATCAAACATAGGGATTTCTGAAAATCCAAATGCTTCTATTTGTTTCACACCAACCTCATCTTCTTCACAAATGATGTCAGATACAAATACAAATTCTGTTATAACTTCCAATATGATCCATTCTGTTTCACCCTCAATTTTCTCAACTCCAACACATGTTAAACCAACTGTTTCCGTTTCCTCGGACGGAGTTCATAACTGGGAAGCAAGTAACTACAACACAAGCAAAACCACTGGAAGCAGTGCAAACTTCCTTGACAACGGCACGGTACCGTTACAAGAAGAAATGAAATGGTCTGAATATCTTAACACACCATTTCTTATGCAGAATCAACCTTCTCAATCTATGTACACAGAACCTAAACCAGAAACAGGTTTCTTAACAGATGAATCTTGTACTAGTTGGAACCAATGCACACAGCAACAGCCAGGTTTTCAACTTTCTGATATATATAGCAAGGATCTACAGAGATTTTCAGTGGCTTATGGACAAACTCTGTAG 1131 0.382 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQSGIDPNTHKPLSEVENDNEKSNKTNQKASVSSNEVMSMVIEPTKPSSIEGYPLEVSTTSKINNSSSSSHELFLDTRFGATTSYFSFQNLNYGSNIGISENPNASICFTPTSSSSQMMSDTNTNSVITSNMIHSVSPSIFSTPTHVKPTVSVSSDGVHNWEASNYNTSKTTGSSANFLDNGTVPLQEEMKWSEYLNTPFLMQNQPSQSMYTEPKPETGFLTDESCTSWNQCTQQQPGFQLSDIYSKDLQRFSVAYGQTL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1559 376 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal1g1559 376 Gene3D - 68 149 - -
Mal1g1559 376 CDD SANT 17 61 IPR001005 -
Mal1g1559 376 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Mal1g1559 376 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Mal1g1559 376 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal1g1559 376 PANTHER MYB DOMAIN PROTEIN 55 303 369 - -
Mal1g1559 376 PANTHER MYB DOMAIN PROTEIN 55 1 288 - -
Mal1g1559 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Mal1g1559 376 SMART sant 66 114 IPR001005 -
Mal1g1559 376 SMART sant 13 63 IPR001005 -
Mal1g1559 376 PANTHER HOMEODOMAIN-RELATED 1 288 - -
Mal1g1559 376 PANTHER HOMEODOMAIN-RELATED 303 369 - -
Mal1g1559 376 CDD SANT 69 109 IPR001005 -
Mal1g1559 376 Gene3D - 11 67 - -
Mal1g1559 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mal1g1559 376 MobiDBLite consensus disorder prediction 119 151 - -
Mal1g1559 376 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1559 Mal-Chr1 20387422 20388777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1559 1 376 MYB Transcription Factor Family AT1G09540 48.905 6.16e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal1g1559 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1559 K09422 - gmx:778072 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1559 1 20387422 20388777 Mal3g4800 3 127985184 127986669 ECH
Mal1g1593 1 20743391 20744846 Mal1g1559 1 20387422 20388777 ECH
Mal1g1559 1 20387422 20388777 Mal1g1559 1 20387422 20388777 ECH
Mal3g4800 3 127985184 127986669 Mal1g1559 1 20387422 20388777 PCT