Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1552 ATGCCTCTTTATGAGTTATATCGTTTGGGGAGAGAGAATCTTGGTAATGAAACTAACAGCACAAGTGTAGCTGATCAACCTTCCTCGCCTGAGAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCAAGCCAAGGTCAATCAAGTAGAGGTAGAAAGAGTCCATCTTGTAGGAGTTTTCCATCTCACTGCTTACCATCACATAGTCCCCGAGGCCGAGATAAAGATGTAGGAGGAGGATTTAGTAACAATAATCCAAAGATAGGAAAGTTTGTTGATGTAGACTCTGGATTGAATGAGATTCCAATGTCGGTGCCATCTCGCGAAGTAGAAGAAATGATGCCTTGGTTGGATTATTCAATGGATGGATCTTTGCAACACGAATATGGTTCTGATTTCTTTCATGAACTCACGGAGAATGACCTTCCTGCCTCGAATAATTTTACTCTATTGGATAAAAGGAGTAATGGAAATCAGATATTTAGGGACTCTCATAAAAGTTCTGCAGAAACGATGAATGTTTCTAAGGGTTCTTCAGCTGAACAGGTTGTTGAGACTGCAAGACATAAAGCTAGTGCCAGTCAGTTATATCCACCACCATCGACTCAATGTCAAACATCATCTGTAACTGTTAGATCCAAGGCATCGGATATAACGGAAAATAATATTGTTAGTAATGGTAACCAGGATGTGCCTTATGGTGAAATTACTCGCATTCCATCTTCCTCGAGCGATTTTTCTAGCTTAAAGGTGCAGAGGCAAGATCCTATAATTCCTGGCAATGGTTCCAATGTAATGAATTTTTCCCATTTTGCAAGGCCTGCTGCTATTGTGAGAGCTAATCTTCAGAACATTGGCTTGAAGTCAGGCTTGAATTCAGCTTCAGCAAGATCAGATAGTATCGGAGTTAAGAATAGAGGCACTGCTTCGACTAGCAGCAATCCTCCTGAGTCAACTCTTGTTAATTCAAGCGGTGAATGTTCAAAGGAACCGGAAATGCGCTGTCATAAGGTGGTGGAGCAATCCAAGGCTGATTTGAAACTGTTGCAGCCAAAATCTCTTAAACCGAATGCTGTAGATTCTAAACAATTGGAGCCTGCTTGCAAAGAGAATGGAATTAAGAATGATCAACCTTCCAATCAAGTTCTTGATGGCGGTGGCGCTAAAGGACACACAGCTGCTGAAAAAGGTTTTGAGATGGCAGTAGCCTCTTCTGTTTGCTCTGACAATGGTGCAGACAGAGGCTCGGATGATCCAAATCGAGATTTGAAACGGAAAAGTAGAGACACTGAGGACTCTGAATGTCATAGTGAAGATGTTGAGGATGAATCGGTGGGTGTTAAAAAGGGAGCTTCCGGACGAGGAGTTGCAGGTTCCAAAAGAAGCCGTGCTGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATAAATGAGAAGATGCGTGCATTACAAGAACTCATACCTAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCCTCAAATGATGTTTCCTGCTGGAATGCAGCCCATGCATTCACCACACATGGCCGCATTTTCACCGATGGGCATCGGCATGCATATGGGGTTAGGTATGGGTTATGGAATGGGAATGCCTGACATGAACGGCGGGCCTTCTAGATTTCCAATGATTCAAGTGCCTCAGATGCAAGGAAATCATATACCTGCTGCACATATGTCTGGACCCTCTGCTATGCATGGGATGGCCAGATCAAATACTCAAGGGTTTGGACTTCCGGGTCAGGGAATTTCCATGCCAATGCCGCGTGCTCCTGTATTTCCTTTTTCAGGAGGGCCTCTTATGAACTCATCGGCTCCGTGTCCATCTTCGTATGGATCCACAGGACACGTTGAAGCTGTGAATCCGGCTTCAGCATGTGGCTCAAAAGATCCAATGCCAAATGTGGACTCACAAATTAAGCAAAACACTGCTGGTCGTGATTCTACAAGCCAGATCCCTAACCAGTCAACTTTGGTGCATAATGGCGGCCATGCTTCAGTGGCTGATGACAGCGGAGCTGCTAATCCTGGCAATATCACTTTGTGA 2157 0.4381 MPLYELYRLGRENLGNETNSTSVADQPSSPENDFFELVWESGQISSQGQSSRGRKSPSCRSFPSHCLPSHSPRGRDKDVGGGFSNNNPKIGKFVDVDSGLNEIPMSVPSREVEEMMPWLDYSMDGSLQHEYGSDFFHELTENDLPASNNFTLLDKRSNGNQIFRDSHKSSAETMNVSKGSSAEQVVETARHKASASQLYPPPSTQCQTSSVTVRSKASDITENNIVSNGNQDVPYGEITRIPSSSSDFSSLKVQRQDPIIPGNGSNVMNFSHFARPAAIVRANLQNIGLKSGLNSASARSDSIGVKNRGTASTSSNPPESTLVNSSGECSKEPEMRCHKVVEQSKADLKLLQPKSLKPNAVDSKQLEPACKENGIKNDQPSNQVLDGGGAKGHTAAEKGFEMAVASSVCSDNGADRGSDDPNRDLKRKSRDTEDSECHSEDVEDESVGVKKGASGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMFPAGMQPMHSPHMAAFSPMGIGMHMGLGMGYGMGMPDMNGGPSRFPMIQVPQMQGNHIPAAHMSGPSAMHGMARSNTQGFGLPGQGISMPMPRAPVFPFSGGPLMNSSAPCPSSYGSTGHVEAVNPASACGSKDPMPNVDSQIKQNTAGRDSTSQIPNQSTLVHNGGHASVADDSGAANPGNITL* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1552 718 PANTHER TRANSCRIPTION FACTOR PIF3 1 689 - -
Mal1g1552 718 MobiDBLite consensus disorder prediction 671 699 - -
Mal1g1552 718 MobiDBLite consensus disorder prediction 410 475 - -
Mal1g1552 718 MobiDBLite consensus disorder prediction 294 333 - -
Mal1g1552 718 MobiDBLite consensus disorder prediction 294 328 - -
Mal1g1552 718 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 465 514 IPR011598 GO:0046983
Mal1g1552 718 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 462 529 IPR036638 GO:0046983
Mal1g1552 718 MobiDBLite consensus disorder prediction 371 393 - -
Mal1g1552 718 PANTHER TRANSCRIPTION FACTOR PIF3 1 689 IPR044273 GO:0003700|GO:0006355
Mal1g1552 718 MobiDBLite consensus disorder prediction 659 718 - -
Mal1g1552 718 MobiDBLite consensus disorder prediction 45 90 - -
Mal1g1552 718 Gene3D - 460 523 IPR036638 GO:0046983
Mal1g1552 718 Coils Coil 718 718 - -
Mal1g1552 718 MobiDBLite consensus disorder prediction 45 65 - -
Mal1g1552 718 CDD bHLH_AtPIF_like 465 527 - -
Mal1g1552 718 MobiDBLite consensus disorder prediction 416 450 - -
Mal1g1552 718 SMART finulus 471 520 IPR011598 GO:0046983
Mal1g1552 718 Pfam Helix-loop-helix DNA-binding domain 469 515 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1552 Mal-Chr1 20269491 20272574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1552 253 587 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 42.105 2.86e-55 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal1g1552 HLH 7.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1552 K12126 - gmx:100794974 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1552 1 20269491 20272574 Mal1g1552 1 20269491 20272574 ECH