Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1550 ATGACAAGGAAGAAGGTGAAACTTGCCTTTATCTCTGATGATTCGGCAAGAAAGGCTACCTACAAGAAGAGAAAGAAGGGTATCCTCAAGAAGGTGAGTGAACTCACCATTCTTTGTGGTATTCCAGCTTGTGCTATAATTTCGAATCCTTTTGATTCTAAAACAGAGGTGTGGCCAGATCTAGAGGGAGCCAAACAGGTGATTGAGAGGTATCAGAATTCATCTGTGAAAGATGGAACAAAGAATGTGAACCAAGAGAGCTTCTTATTGCAAAGGATTACTAAAGCTAGGGAACAACTTCAAAAGCAAAGACACGACAATCGTGAGAAGGAGTTGAACATTCTTATGATTGGGTATATGCAAAACAAACATCTGCCGGATGATTTATCTGTTTCAGAATTGAAAGAATTTGATAAGCTAATTGAGAAAAATCTCAAGGATATTGATAACAAGATTGTTGCACTTAATTGA 471 0.3779 MTRKKVKLAFISDDSARKATYKKRKKGILKKVSELTILCGIPACAIISNPFDSKTEVWPDLEGAKQVIERYQNSSVKDGTKNVNQESFLLQRITKAREQLQKQRHDNREKELNILMIGYMQNKHLPDDLSVSELKEFDKLIEKNLKDIDNKIVALN* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1550 156 Coils Coil 90 113 - -
Mal1g1550 156 PANTHER MADS BOX PROTEIN 2 154 - -
Mal1g1550 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal1g1550 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal1g1550 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal1g1550 156 Coils Coil 155 156 - -
Mal1g1550 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Mal1g1550 156 Gene3D - 13 116 IPR036879 GO:0003677|GO:0046983
Mal1g1550 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mal1g1550 156 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
Mal1g1550 156 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1550 Mal-Chr1 20225922 20226392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1550 1 152 MADS-box Gene Family AT5G26630 47.712 2.94e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g1550 SRF-TF 1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1550 - - mtr:MTR_5g047560 218.779