Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1520 ATGTTTCCTAGCTCAAGCATAGAAGCCAACAAGACTATGGTTCCACCACCATCACATACCAAACTCACCAATGATGTTGTGTCCAACGGGAAACAGTACTCTCCTCCTGATGACTTAGAGACCTTCTACGTCAAACTCACTGAAGTGTTGGACTCCTCTGGGTTCAATCTTGTTTTCAATGTCCGAGAAACATCCTTAGACTTGTACCTGTTTTACTTGGAAGTCACCAGAAGAGGAGGTTTTCACCAGGTTGGTCTACAAAACAAATGGGTTGAAGTTGTCTCTGCACTAAAACTGGAAGGCAACAATGCAATGTTATCTGCTCAAGTTGAAAAGCTCTATGCAACACTTCTATACAAATTTGAGAAATTGTACTTCTATAGGTTTCCTGCAACTGCCATCCCCAAAGGTACACTTAAAAGGAAGCAGAACTCAACTCCTGGTTTATCTCAATTAATGGCTGATGAAGATAATCTGAAGGTGGCAAAGATGTCCAAGGACTACTCTAGCCAAATGACAGCAAGAGATGGATTTCAAGAATCTCGAGTGCTTCTACAAGCACCCTCAAATGACAATGAAAAGAAGAAACGGCGAGGTGCTCCAACGGGAAAAAGTGGATATCAACTATTCCTCAAGGAGGAATGTGCTCGATTAAAAGCTCATGATCAGGACATAGATGGAAAAAGAATCCTTCGAATGGCTGTTGATGCTTGGCAGAAGATGTCTGACACTGATAAACAGCCATATGTGGCTGAAAGCAAGAATATAAAGGAGAAAAACAAGGAAGCAGTGATCATTGACAATAAACAGAAGAGTAATGATGATCTTAAGAAGGATGAAAAGAGGGCTAGTGTGTGCGGTGACTACGGTGTAACTTCGCAACCTCTACCAAATTACTCTTTTGTCAACAATGCAGCTGTGGAGTTAGGTCTTAAAATGACAGAAAAATCACTCAAGGATCCCTTCTTCCCAAGTTGA 978 0.4141 MFPSSSIEANKTMVPPPSHTKLTNDVVSNGKQYSPPDDLETFYVKLTEVLDSSGFNLVFNVRETSLDLYLFYLEVTRRGGFHQVGLQNKWVEVVSALKLEGNNAMLSAQVEKLYATLLYKFEKLYFYRFPATAIPKGTLKRKQNSTPGLSQLMADEDNLKVAKMSKDYSSQMTARDGFQESRVLLQAPSNDNEKKKRRGAPTGKSGYQLFLKEECARLKAHDQDIDGKRILRMAVDAWQKMSDTDKQPYVAESKNIKEKNKEAVIIDNKQKSNDDLKKDEKRASVCGDYGVTSQPLPNYSFVNNAAVELGLKMTEKSLKDPFFPS* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1520 325 MobiDBLite consensus disorder prediction 1 30 - -
Mal1g1520 325 SMART ARID_2 33 122 - -
Mal1g1520 325 CDD HMGB-UBF_HMG-box 204 259 - -
Mal1g1520 325 SMART bright_3 37 127 IPR001606 GO:0003677
Mal1g1520 325 SUPERFAMILY ARID-like 34 126 IPR036431 GO:0003677
Mal1g1520 325 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 319 - -
Mal1g1520 325 MobiDBLite consensus disorder prediction 173 188 - -
Mal1g1520 325 ProSiteProfiles ARID domain profile. 29 126 IPR001606 GO:0003677
Mal1g1520 325 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 9 319 - -
Mal1g1520 325 Gene3D High mobility group box domain 186 265 IPR036910 -
Mal1g1520 325 SUPERFAMILY HMG-box 199 262 IPR036910 -
Mal1g1520 325 Pfam HMG (high mobility group) box 204 263 IPR009071 -
Mal1g1520 325 Gene3D - 19 134 IPR036431 GO:0003677
Mal1g1520 325 MobiDBLite consensus disorder prediction 173 204 - -
Mal1g1520 325 Pfam ARID/BRIGHT DNA binding domain 40 122 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1520 Mal-Chr1 19739307 19741399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1520 42 258 ARID Transcription Factor Family AT3G13350 24.111 8.95e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mal1g1520 ARID 9.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1520 - - mtr:MTR_5g095070 347.051