Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1517 ATGGATTTTCAGGGTTTCTTAAACGACTTGCAGGATTGGGAACTTTCTACAAAGGATAAAGCGTCAAAAACCAAGTCACAAAAGGAAAATAAATTCACAAAGGGTTCATCTTCTCGGAGTGATGGATCAGTGAGTGTGGGGAATGGATCAAGAGGAGAAACTATTTCTTTTGATCATGCGAAAAATTCTTCAGCTCAGTATGATTTCTCAAGAAATAGTGACGTGTTGAGTCGTGTGAGTAGTAGTTTTGCTTCTGAAGATGTTCCTGATGCTGCTTCCGAGAAAGACCTGGGTAATGAGCTTTTCAAACAGAAGAAGTTTAAGGAAGCTATTGATTGCTATTCAAGGAGCATTGCCTTCTCACCAACTGCTGTAGCCTATGCAAATAGGGCAATGGCCCATATAAAGCTAAGAAGATTTCGAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTCGACGATCGTTACATAAAAGCATACTCACGGCGAGCAACAGCTAGAAAAGAACTTGGCAAAAATAAGGAATCCATGGAGGATGCCGAGTTTGCCATGAGGTTGGAACCTAACAATCAAGAAGTCAAGAAACAGTATGCTGATGCTAAGTCACTGTACGAGAAGGAAATTCTACATAAAGCATCCAAAGCACTAAGAAACACTGTAGAAAAAGTGGGCAACTCCGAGACAAAAGTTAATGGAAGCAGCAGCATCCACTCTGTTTCACATGATACTAAAAAGTCTGGGCCAGCTGAAGCTCATCGTCAAATAAAGGGTAATGAGCGGCAAGTTCCCGCTAAAGAATCACTCTTACTGGAGGAAATCACTAATAAGGATACAAAATCCGCAAACAGGACTCAAGGACAAGTAGGAAATGGTTCTAAGGAAGGTTATAATGCAAGCCACGGCTTGGCACAGAGAAATCAGAAAACTAGTAAGCCGGAAATGAAAGCATCTGTTGAACAGCTTGCTTCTCGAGCTGCTTCTCGAGCCATGGCTGAAGCTGCAAAAAACATAACGCCCCCAACTACAGCTTATCAGTTTGAGGTCTCTTGGAGAGGATTTTCAGGTGATCTTGCTCTGCAGGCTTGTCTATTAAAGGCAATGTCTCCCCATGAATTACCGAAAATATTCAAAAATGCCTTGTCTTCTACACTGCTAATCGAGATCATCAAGTGTGTTGCATCCTTTTTCGCTGAAGACATGGATCTAGTTGTCAGTTATATGGATAATTTAACCAAGGTACCGAGATTTGATGTGATCGTAATGTGCCTTCCATCAGCAGCTAAGGATGACTTGCGCAAGCTCTGGAATCAAGTGTTCTGCGGTGAAGCAACTCCAATGGAGTATGCAGAGATTCTGGGCAACCTCCGATCAAAATTCTTCCTTGAGTAG 1392 0.4231 MDFQGFLNDLQDWELSTKDKASKTKSQKENKFTKGSSSRSDGSVSVGNGSRGETISFDHAKNSSAQYDFSRNSDVLSRVSSSFASEDVPDAASEKDLGNELFKQKKFKEAIDCYSRSIAFSPTAVAYANRAMAHIKLRRFREAEDDCTEALNLDDRYIKAYSRRATARKELGKNKESMEDAEFAMRLEPNNQEVKKQYADAKSLYEKEILHKASKALRNTVEKVGNSETKVNGSSSIHSVSHDTKKSGPAEAHRQIKGNERQVPAKESLLLEEITNKDTKSANRTQGQVGNGSKEGYNASHGLAQRNQKTSKPEMKASVEQLASRAASRAMAEAAKNITPPTTAYQFEVSWRGFSGDLALQACLLKAMSPHELPKIFKNALSSTLLIEIIKCVASFFAEDMDLVVSYMDNLTKVPRFDVIVMCLPSAAKDDLRKLWNQVFCGEATPMEYAEILGNLRSKFFLE* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1517 463 SUPERFAMILY TPR-like 90 207 IPR011990 GO:0005515
Mal1g1517 463 SMART tpr_5 158 191 IPR019734 GO:0005515
Mal1g1517 463 SMART tpr_5 91 124 IPR019734 GO:0005515
Mal1g1517 463 SMART tpr_5 125 157 IPR019734 GO:0005515
Mal1g1517 463 MobiDBLite consensus disorder prediction 17 59 - -
Mal1g1517 463 PANTHER OS05G0129900 PROTEIN 1 462 - -
Mal1g1517 463 MobiDBLite consensus disorder prediction 244 261 - -
Mal1g1517 463 MobiDBLite consensus disorder prediction 280 317 - -
Mal1g1517 463 Gene3D Tetratricopeptide repeat domain 79 189 IPR011990 GO:0005515
Mal1g1517 463 MobiDBLite consensus disorder prediction 17 35 - -
Mal1g1517 463 Pfam Tetratricopeptide repeat 126 154 IPR019734 GO:0005515
Mal1g1517 463 ProSiteProfiles TPR repeat profile. 91 124 IPR019734 GO:0005515
Mal1g1517 463 MobiDBLite consensus disorder prediction 36 59 - -
Mal1g1517 463 Pfam Potential Monad-binding region of RPAP3 340 429 IPR025986 -
Mal1g1517 463 MobiDBLite consensus disorder prediction 223 317 - -
Mal1g1517 463 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1517 Mal-Chr1 19696431 19702801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1517 95 161 U-box Gene Family AT3G07370 41.176 5.11e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1517 K23002 - gmx:100784528 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1517 1 19696431 19702801 Mal1g1517 1 19696431 19702801 ECH