Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1493 ATGTCGTATCGTCCAAACGCAAACTCCAGGACCGAGGTCCGTCGCAATCGCTACAAGGTCGCCGTCGATGCCGAAGAAGGCCGCCGACGCCGCGAAGACACCATGGTTGAGATCCGTAAGAATCGTCGCGAAGAGAGTTTGTTGAAAAAGAGACGCGAAGGTCTTCAACCTCAGCAGATTCCTTCCGCTCTTCACTCTAACGTTGTTGAGAAGAAGTTGGAACATTTACCAACTATGGTTGCTGGTGTTTGGAGTGATGATAATAATTTGCAGCTTGAATCAACTACTCAGTTTCGAAAGCTGCTATCAATTGAACGTACTCCACCGATTGAGGAGGTTATACAGACTGGTGTAGTTTCTCGTTTCGTTGAGTTTCTGATGAGGGAAGACTTTCCTCAGTTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACGTCTGAAAACACTAAGGTGGTAATTGACCACGGGGCTGTCCCAATTTTTGTGAAGCTCCTTGCTTCTTCTAGTGATGATGTCCGTGAACAGGCAGTGTGGGCATTAGGAAATGTTGCTGGAGATTCTCCCAGATGTCGTGATCTTGTTCTCGGTCACGGGGCTTTGATTCCTCTGTTGGGACAATTGAATGAACATGCCAAGCTTTCTATGCTGAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCCGGTCTTATCCATTCAAATGATGAAGAAGTCTTGACTGATGCCTGCTGGGCACTATCATATCTTTCGGATGGTACCAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTTCTATTGCACCCATCTCCTTCAGTGCTAATTCCTGCTCTTCGTACTGTTGGAAACATTGTCACCGGAGATGATGTGCAAACTCAGGTTATCATCAATCATCAGGCTCTTCCTTGCCTATATAGTCTATTGACCAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATTACAGCTGGGAATAAACAGCAGATTCAGGCTGTGATTGAGGCCAATATATTCGGTCCTTTGGTGAACCTACTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACATCTGGTGGATCTCACGAACAAATCAAGTACCTAGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTTATCTGTCCCGATCCAAGGATCGTGACAGTTTGCTTGGAAGGCCTTGAAAACATCTTGAAGGTTGGAGAAGCTGATAAAAATATAGGCAATACTGGTGACGTGAATCAATACGCCCAAATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACTCAGAGATTTATGAAAAGGCTGTGAAGATTCTTGAGACATACTGGTTGGAGGAAGAAGACGAGACTATGCCTCCAGGCGATGCTTCTCAATCAGGATTCAACTTTGGTAGCGCTGAGGTTCCTTCTGTGCCTTCGGGTGGTTTCAACTTCAATCAGTAG 1602 0.4488 MSYRPNANSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQPQQIPSALHSNVVEKKLEHLPTMVAGVWSDDNNLQLESTTQFRKLLSIERTPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASSSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLGQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALAGLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDVQTQVIINHQALPCLYSLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANIFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNQYAQMIDDAEGLEKIENLQSHDNSEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSAEVPSVPSGGFNFNQ* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1493 533 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Mal1g1493 533 Pfam Armadillo/beta-catenin-like repeat 317 358 IPR000225 GO:0005515
Mal1g1493 533 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Mal1g1493 533 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Mal1g1493 533 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Mal1g1493 533 Pfam Armadillo/beta-catenin-like repeat 108 147 IPR000225 GO:0005515
Mal1g1493 533 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Mal1g1493 533 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Mal1g1493 533 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Mal1g1493 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Mal1g1493 533 SUPERFAMILY ARM repeat 14 501 IPR016024 -
Mal1g1493 533 Pfam Atypical Arm repeat 458 504 IPR032413 -
Mal1g1493 533 Gene3D - 13 52 IPR036975 GO:0006606
Mal1g1493 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Mal1g1493 533 SMART arm_5 275 315 IPR000225 GO:0005515
Mal1g1493 533 SMART arm_5 106 147 IPR000225 GO:0005515
Mal1g1493 533 SMART arm_5 149 189 IPR000225 GO:0005515
Mal1g1493 533 SMART arm_5 403 443 IPR000225 GO:0005515
Mal1g1493 533 SMART arm_5 360 400 IPR000225 GO:0005515
Mal1g1493 533 SMART arm_5 190 232 IPR000225 GO:0005515
Mal1g1493 533 SMART arm_5 317 358 IPR000225 GO:0005515
Mal1g1493 533 SMART arm_5 234 273 IPR000225 GO:0005515
Mal1g1493 533 Gene3D - 74 497 IPR011989 -
Mal1g1493 533 PANTHER IMPORTIN SUBUNIT ALPHA 2 522 - -
Mal1g1493 533 PIRSF Importin_alpha 5 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Mal1g1493 533 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Mal1g1493 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Mal1g1493 533 PANTHER IMPORTIN ALPHA 2 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1493 Mal-Chr1 19346576 19351137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1493 132 392 U-box Gene Family AT2G28830 22.519 2.43e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1493 K15042 - gmx:100789135 999.579
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1493 1 19346576 19351137 Mal3g4855 3 128592899 128597053 ECH
Mal1g1493 1 19346576 19351137 Mal1g1493 1 19346576 19351137 ECH
Mal5g4887 5 122219567 122223245 Mal1g1493 1 19346576 19351137 ECH
Mal3g4859 3 128664032 128668440 Mal1g1493 1 19346576 19351137 PCT