Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1463 ATGAGTGGCCGGTCAAGTCGTACATTATATGTTGGTAATCTTCCTGGCGATATTCGCCTGAGAGAAGTGGAGGATCTTTTCTACAAGTACGGTCCTATCGTTGACATTGATCTGAAGATCCCTCCAAAACCACCAGGTTATGCTTTTGTTGAGTTTGAGGATGCTCGTGATGCTCAAGATGCGATTTACTATAGAGATGGTTATGATTTTGATGGTTATCGATTACGGGTTGAACTTGCACATGGTGGACGGGGAAGTTCATCATCAGTAGACCGATACAGTAGGCATAGCAGTAGAAGTGGTAGCCGTGGAGTTTCCAGGAGATCTGACTATCGCGTTCTTGTGACTGGATTACCTCCTTCCGCTTCATGGCAAGACCTGAAAGATCACATGCGCAAAGCTGGTGATGTGTGTTTTTCTCAAGTGTTCCGTGAGCGTGGAGGCCTGACTGGGATAGTGGATTATACCAATTATAATGATGTGAAATATGCTATCAGGAAACTTGATGACTCTGAATTTCGAAATGCATTTTCTAGGTCATACATACGGGTGAGGGAATATGATCGGAGTTATTCTAGAAGTCCGAGTCGTGATTCAAGGAGGAGCTATTCTCGTAGCCGCAGCCCATATGTAACACGAAGTCGAAGCCGCAGTCTAAGTCATAGCTACAGTGGCAGGAGCAGAAGTTTGTCTCCAAAAGCAAAGCACTCTCGGCGCTCATTATCTCTTTCAAGATCACAGTCGAGATCCAGATCTCCGTGTTCATCCCCTCGACGTTACCGTAGTCGCAGTCCAAGCCAAAGTTCAAGGAGCATGTAA 819 0.4567 MSGRSSRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGYDFDGYRLRVELAHGGRGSSSSVDRYSRHSSRSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYNDVKYAIRKLDDSEFRNAFSRSYIRVREYDRSYSRSPSRDSRRSYSRSRSPYVTRSRSRSLSHSYSGRSRSLSPKAKHSRRSLSLSRSQSRSRSPCSSPRRYRSRSPSQSSRSM* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1463 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Mal1g1463 272 MobiDBLite consensus disorder prediction 188 272 - -
Mal1g1463 272 MobiDBLite consensus disorder prediction 243 272 - -
Mal1g1463 272 CDD RRM1_SF2_plant_like 8 79 - -
Mal1g1463 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Mal1g1463 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Mal1g1463 272 MobiDBLite consensus disorder prediction 82 105 - -
Mal1g1463 272 SMART rrm1_1 8 78 IPR000504 GO:0003723
Mal1g1463 272 SMART rrm1_1 112 183 IPR000504 GO:0003723
Mal1g1463 272 Gene3D - 2 110 IPR012677 -
Mal1g1463 272 MobiDBLite consensus disorder prediction 205 230 - -
Mal1g1463 272 CDD RRM2_SF2_plant_like 111 186 - -
Mal1g1463 272 SUPERFAMILY RNA-binding domain, RBD 5 176 IPR035979 GO:0003676
Mal1g1463 272 Gene3D - 111 188 IPR012677 -
Mal1g1463 272 MobiDBLite consensus disorder prediction 188 204 - -
Mal1g1463 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Mal1g1463 272 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 258 - -
Mal1g1463 272 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1463 Mal-Chr1 18857164 18866074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1463 11 80 Eukaryotic Initiation Factors Gene Family AT3G11400 36.986 5.73e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1463 K12890 - gmx:100794282 324.709