LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal1g1450	ATGGCCGGAACAAACGAAAACGCAACGAATGAAACCATACGTGAATACACAGAACAAGAAGTAGGCGAGGACCGAAGCTTCGAAGAATTAGGGTTAGACGCACGTCTCGTTCGAGCTTTACTCAAGAAAGGAATCGAGAAACCTACTCCAATTCAACACGTTGCGATTCCGTTGATTCTTGAAGGTAAAGACGTGGTTGCTCGAGCGAAAACTGGTTCTGGAAAAACACTTGCTTATCTTCTACCATTGCTTCAGAAACTGTTTACTGCTAATGGTGATAGGAAGAAGCTTGCACCTAATGTGTTTGTTCTTGCTCCGAGTCGAGAACTTTGTCAACAGATATATGTGGAAGTGAAGTCACTCCTTGAGTTATGCAAAGTTCAGCTGAAAGTTGTGCAGCTGAATAGCAATATGCTTGCTACTGACTTGCAAGCAGCACTTGTTGGACCTCCTGATGTTTTGATCTCCACTCCTGCTTGCATAGCTAAGTGTTTGTCCAACTCAATACTTCAGCCAGCATCCATTAATGGTTCTCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTATTATCATATGGGTATGAAAATGACATAAAAGCTTTAACTCCTCACATACCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCCGATGTTGACAAACTAAAAAAGTTGATGTTACATAACCCCGTTATTTTGACTCTGCCTGAAGTGGGAAACCGTAAGGATGAGGTCATCCCTAAAAATGTTCAGCAGTTCTGGATCTCCTGTCCTGCCAATGATAAGTTGCTCTACATCTTTGCTTTGTTGAAGTTGGAGTTAGTCCAAAAGAAAGTTCTGATATTCACTAATAACATAGATACGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGGATCAAGTCGGCTGTTTTAAATGCTGAATTGCCTCAGAATTCCCGTCTCCATATTCTTGAGGAATTCAATGCCGGCCTATTTGATTATCTAATTGCAACAGATATCAGCCAGCCAATGGAGAAGGATGAAGCACCTAAGGAAAATATTGTTGGATCACGAAAGTCTAGAAAACATGCAAAGCTAAAATTAGATTCTGAATTCGGAGTAGTAAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCGCAGTGTGGCTGGATACGTACATAGAATTGGACGTACGGGTAGAGCATACAGCTCTGGTGCTTCCGTCTCCTTGGTTTCTACAGATGAGATGGATACCTTTGAAGAAGTAAGATCTTTTGTTGGGGACAATGAAAACAACGGCTCAAACTCAATTGCCGAATTTCCCTTACTCACCAAGAATGCAGTTGAATCTTTACGGTATAGGGCCGAGGATGTTGCAAAGAGTGTAACTAAAATTGCTGTCCGAGAATCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCCGAAAAGCTGAAGGCCCACTTTGAAACTAATCCAAGAGACCTAGATCTATTGAAACATGACAAAGTTTTGAGCAAAAACGCCCCTCCTCCACACCTTCGTGATGTCCCGGATTACCTAATAGACAAAACAACAAAAGAGGCTAGGGCAATGGTTAAGCTTACCAGAGATGCAATGGGAAATAATAATCACCGACGGGGATCCAAGAGAAAATCAAGAAAAGGCAGTGACCCTCTGATGGCCATCTCTGCTGGGGTATCAAAAAGACCGCACACAGGTTTTAAAAAGGATGGTGCAAGCAATGGCAAAAGCAGTGATAGACAAAAACACAAAAAGACAAAGGGAATTTGA	1812	0.4145	MAGTNENATNETIREYTEQEVGEDRSFEELGLDARLVRALLKKGIEKPTPIQHVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTANGDRKKLAPNVFVLAPSRELCQQIYVEVKSLLELCKVQLKVVQLNSNMLATDLQAALVGPPDVLISTPACIAKCLSNSILQPASINGSLETLVLDEADLLLSYGYENDIKALTPHIPRSCQCLLMSATSSADVDKLKKLMLHNPVILTLPEVGNRKDEVIPKNVQQFWISCPANDKLLYIFALLKLELVQKKVLIFTNNIDTSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDISQPMEKDEAPKENIVGSRKSRKHAKLKLDSEFGVVRGIDFKNVYTVINFEMPRSVAGYVHRIGRTGRAYSSGASVSLVSTDEMDTFEEVRSFVGDNENNGSNSIAEFPLLTKNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFETNPRDLDLLKHDKVLSKNAPPPHLRDVPDYLIDKTTKEARAMVKLTRDAMGNNNHRRGSKRKSRKGSDPLMAISAGVSKRPHTGFKKDGASNGKSSDRQKHKKTKGI*	604

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal1g1450	603	MobiDBLite	consensus disorder prediction	541	603	-	-
	Mal1g1450	603	Gene3D	-	242	447	IPR027417	-
	Mal1g1450	603	SMART	ultradead3	44	257	IPR014001	-
	Mal1g1450	603	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	21	238	IPR027417	-
	Mal1g1450	603	PANTHER	ATP-DEPENDENT RNA HELICASE DDX56-RELATED	21	549	-	-
	Mal1g1450	603	Pfam	Helicase conserved C-terminal domain	265	408	IPR001650	-
	Mal1g1450	603	Pfam	DEAD/DEAH box helicase	49	226	IPR011545	GO:0003676\|GO:0005524
	Mal1g1450	603	MobiDBLite	consensus disorder prediction	577	593	-	-
	Mal1g1450	603	CDD	DEADc_DDX56	32	239	-	-
	Mal1g1450	603	PANTHER	RNA HELICASE	21	549	-	-
	Mal1g1450	603	Coils	Coil	478	498	-	-
	Mal1g1450	603	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	272	454	IPR001650	-
	Mal1g1450	603	Gene3D	-	2	240	IPR027417	-
	Mal1g1450	603	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	25	53	IPR014014	GO:0003724
	Mal1g1450	603	SMART	helicmild6	294	408	IPR001650	-
	Mal1g1450	603	CDD	SF2_C_DEAD	254	417	-	-
	Mal1g1450	603	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	56	237	IPR014001	-
	Mal1g1450	603	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	249	432	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal1g1450	Mal-Chr1	18617857	18626123	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal1g1450	26	448	Eukaryotic Initiation Factors Gene Family	AT3G19760	24.350	3.08e-36	138

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal1g1450	K14810		-	gmx:100800749	978.393