Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1413 ATGGATCATCAAGGTCATGGCCAAAACCCAAATATGGGTGTTGTTGGTAGTGGACAAATGGCCACATATGGTGCTAATCCATACCAGCCCAACCCTATGACTGGGTCACCTGGGATGGTTGTTCCCTCTGTTGGGACTATTCAACCCGGTGGTCAACCAGATGGATCTCAGCTGGGACAACATCAGCTTGCTTATCAGCACATTCATCAGCAGCAGCAACAGCAGCAGCAGCAACAACTCCAAGCCTTTTGGGGAAATCAATATCAAGAAATCGAGAAGGTAACTGATTTCAAAAACCACAGCCTTCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTGAAGATGATATCAGCTGAGGCGCCGGTTGTATTTGCAAGGGCGTGTGAAATGTTCATTCTGGAGTTAACCTTGCGTTCTTGGAACCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAGAATGATATTGCAGCAGCCATCACAGGAACTGATATCTTTGATTTCTTGGTTGACATTGTGCCAAGGGAGGACCTGAAAGATGAAGTGCTTGCATCAATACCAAGAGGACCAATGCCTGTTGGAGGGCCTGCCGATGGAATTCCTTATTGCTATATGACTCCTCAAAATGCACAGCAAGCTGGAAATACTGGTCTCATGATGCATAATCCAAACATGTATGCTCCACAGTCTCATCCATACATGGCACCTCAAATGTGGCCCCAACCACCGGAGCAACAACAATCGCCTTCAGATCATTAG 771 0.463 MDHQGHGQNPNMGVVGSGQMATYGANPYQPNPMTGSPGMVVPSVGTIQPGGQPDGSQLGQHQLAYQHIHQQQQQQQQQQLQAFWGNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPREDLKDEVLASIPRGPMPVGGPADGIPYCYMTPQNAQQAGNTGLMMHNPNMYAPQSHPYMAPQMWPQPPEQQQSPSDH* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1413 256 MobiDBLite consensus disorder prediction 235 256 - -
Mal1g1413 256 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Mal1g1413 256 Pfam Core histone H2A/H2B/H3/H4 67 164 IPR007125 GO:0003677
Mal1g1413 256 SUPERFAMILY Histone-fold 69 173 IPR009072 GO:0046982
Mal1g1413 256 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 256 - -
Mal1g1413 256 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1413 Mal-Chr1 18345013 18345783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1413 1 243 CCAAT-HAP5 Transcription Factor Family AT1G08970 64.344 3.78e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mal1g1413 Histone 3.4e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1413 K08066 - gmx:100527803 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4946 3 129473897 129474679 Mal1g1413 1 18345013 18345783 PCT