Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1405 ATGGATAACTCACATCTTTGCTTTTTCTTCATCTTTCTCTTTTGCTCCGGCGTCTCTTTCGCCGGAGCACAATCCAACGGCAGCACAAACACAAACGACAACAACTATTACAACCGTGTAAGCCCCTCCATGGCTATAATAATTGTAATCCTCATCGCTGCTCTTTTTCTCATGGGCTTCTTCTCAATCTACATACGTCAATGCGCTGATTCACCTTCCAACAGCATCCGCAACATGGCGGGAGGTATAGCCGGACGTTCACGACGCGCGGCGCGTGGTCTCGACGCTTCGGTGATCGAGACGTTCCCGATCTTGGAATACTCTGCGGTGAAGATTCACAAAGTCGGAAAAGGCGCGTTGGAATGTGCTGTTTGTTTGAATGAGTTTGAAGAGACTGAAACGCTGCGTTTGATTCCAAAATGTGATCATGTTTTTCACCCTGAGTGTATTGATGAATGGCTCGGTTCACATACAACTTGCCCGGTTTGTCGAGCTGATTTGGTTCCTCAACCGGGTGAATCGGTTCACGGAATCCCGTTGATCAATACCGAACCACAAGATATTGAAGCTCAAAATAATGCTGTTGAATCGGTTCAAGAACATGAAAACACGGATGGTTCTGTAAAAGTCGAGTCAACTGAACCGGAAGTGTTGGACTTAAACCAGACGCTGAACCGGAATCGTACAAGAGGTTCACGGTCTGGTAGGCCACGTTGGTTTCCACGGTCTCATTCGACCGGTCATTCAGTGGTTCAACCGGGTGAGAATACTGAACGGTTCACTTTGAGGTTACCTTTAGAAGTAAGGAAACAAATATTACAGAACCCGGAATTGCATAGAGCTAGAAGCTTGGTTATGTTGCCAAGAGAAACTAGTTCACGTAGGGGTTATCGAACCGGTGGTGGTGAGGGAAGTAATAGAGGAGGGAAGTCTGTAAGGCGGTTGGACCGGGGTTTATTATCAGACCGATGGGTTTTTACTATGGCACCACCATTCCTCGTAAGAGCATCTTCAATGAGGTCACCTAGGGTGGCGAATAGCGCCGGTGAAGGTACCTCTACTTCAACGGCTATGGCGGCAGCTGTTGACTGGCCGCGCCCTCCGGTTTAA 1110 0.4802 MDNSHLCFFFIFLFCSGVSFAGAQSNGSTNTNDNNYYNRVSPSMAIIIVILIAALFLMGFFSIYIRQCADSPSNSIRNMAGGIAGRSRRAARGLDASVIETFPILEYSAVKIHKVGKGALECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRADLVPQPGESVHGIPLINTEPQDIEAQNNAVESVQEHENTDGSVKVESTEPEVLDLNQTLNRNRTRGSRSGRPRWFPRSHSTGHSVVQPGENTERFTLRLPLEVRKQILQNPELHRARSLVMLPRETSSRRGYRTGGGEGSNRGGKSVRRLDRGLLSDRWVFTMAPPFLVRASSMRSPRVANSAGEGTSTSTAMAAAVDWPRPPV* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1405 369 MobiDBLite consensus disorder prediction 222 256 - -
Mal1g1405 369 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Mal1g1405 369 MobiDBLite consensus disorder prediction 340 359 - -
Mal1g1405 369 CDD RING-H2_EL5_like 121 164 - -
Mal1g1405 369 PANTHER RING FINGER DOMAIN-CONTAINING 6 311 - -
Mal1g1405 369 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 311 - -
Mal1g1405 369 MobiDBLite consensus disorder prediction 340 369 - -
Mal1g1405 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 169 IPR013083 -
Mal1g1405 369 MobiDBLite consensus disorder prediction 290 312 - -
Mal1g1405 369 SUPERFAMILY RING/U-box 116 171 - -
Mal1g1405 369 SMART ring_2 122 163 IPR001841 -
Mal1g1405 369 Pfam Ring finger domain 121 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1405 Mal-Chr1 18186367 18187476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1405 3 349 Rapid Response to Elicitors AT3G05200 45.777 1.73e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1405 K10664 - gmx:100810865 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4952 3 129550698 129551804 Mal1g1405 1 18186367 18187476 PCT