Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1404 ATGTGTTTACCTGAAGAGGAAAGAGATAGAGTGAAAGACATGGCACTAGAAGCAGTGGTTTATCCACAAACACAAGACCCTTTTAGCTATGGAATCAAAGATTTTTACAACTTCAACTTCAACACTTTTGTTGCAAAAGACCAACAAGAACAAAGATCTTTCAGTTATGTAGAAAACCAAACAGAGAATAATTTTTCTTATGGTGATTGGAATAACAATAGTTCCACTTTTTCACCACCTCATTTCAATGAAGTTCAAGAAACTACTACTGATCCAAGTAGTAACAATACTCAAAACTTTCATGCTTCACCCTCAGTGAACACAGTTATTCGTCCGAAAAGGCGCAGAGCTAGAAGCAGAAAGAACAAAGAAGAAATTGAGAATCAAAGAATGACTCACATTGCTGTTGAGCGCAATAGAAGAAAGCAGATGAATGAATATCTTTCGATTCTTCGCTCTCTAATGCCAGATTCTTACATCCAAAGGGGTGATCAAGCATCTATAATTGGAGGTGCTATTAACTTTGTTAAAGAGCTTGAGCAAAAGTTTCATCTTCTTGATGCTAAGAAAGGAGAGGTGAAATCTGATGATGCTGGTGGATCAAACAACAAGCCATTTTCTGAATTCTTTTTATTTCCACAGTATTCAACTAGTGGTGGTGTTTGTGGTAATTCATCTAATTCTACAGCTACTATTGGTGAAAAAGTTGGTGAGATTCAATCTTGCATTGCTGACATAGAAGTGACAATGGTGGAAAACCATGCAAATCTTAAAATAAGATCAAAAAAGAGACCAAAGCAGCTCTTGAAAATGGTATCTGGTTTGCAAAACATGCGCTTCACAATCTTGCATCTAAATGTTACCACTACTGGTGAAATTGTTCTCTACTCTCTCAGTGTTAAGGTTGAAGATGATTGCAAGTTGGGATCAGTGGATGATATAGCTGCAGCTGTATACCAAATGGTGAATAGGATTCAACAAGAGGCAATGTTGAATTAA 999 0.3664 MCLPEEERDRVKDMALEAVVYPQTQDPFSYGIKDFYNFNFNTFVAKDQQEQRSFSYVENQTENNFSYGDWNNNSSTFSPPHFNEVQETTTDPSSNNTQNFHASPSVNTVIRPKRRRARSRKNKEEIENQRMTHIAVERNRRKQMNEYLSILRSLMPDSYIQRGDQASIIGGAINFVKELEQKFHLLDAKKGEVKSDDAGGSNNKPFSEFFLFPQYSTSGGVCGNSSNSTATIGEKVGEIQSCIADIEVTMVENHANLKIRSKKRPKQLLKMVSGLQNMRFTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDDIAAAVYQMVNRIQQEAMLN* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1404 332 SMART finulus 134 185 IPR011598 GO:0046983
Mal1g1404 332 MobiDBLite consensus disorder prediction 65 106 - -
Mal1g1404 332 PANTHER MAX DIMERIZATION, MAD 14 332 - -
Mal1g1404 332 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 332 - -
Mal1g1404 332 Pfam Helix-loop-helix DNA-binding domain 129 180 IPR011598 GO:0046983
Mal1g1404 332 Gene3D - 114 196 IPR036638 GO:0046983
Mal1g1404 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 193 IPR036638 GO:0046983
Mal1g1404 332 MobiDBLite consensus disorder prediction 65 128 - -
Mal1g1404 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 179 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1404 Mal-Chr1 18144359 18145870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1404 14 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.580 1.58e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal1g1404 HLH 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1404 - - pvu:PHAVU_007G181900g 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4953 3 129568697 129570065 Mal1g1404 1 18144359 18145870 PCT