Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1392 ATGGCGAATGAGGGTGACTCTCACCAGATAAATCATGGTTTATGGAAACATAAGGGAAGTTTTGCTAGTAAATCAAAGAAGATAGGATCTCTATTTTCTTGTTCTGCTTCTGCTCAAGACTTGAGAAATATGGACCTAGAGAAAGAGAAAGACGACGAGGCGTCTCCAAGAGGAGTCTTAGAGGCTTGTGTTAAAGGCTTTGATGCTCATCAACCACCTGAACCGGAACCCAGTTGTTCGAATTCGAGGGCGCGTTCTCATTGGGGCAAATTTTTCAAATTGTGGAAGAGAAGATCTTTTAAACGCCTAGCTTCTATTCCTCCAATTGGTGTGCCAAAGATACCAAAGTGGAAAAGTAGAAGCACTAGGGAAAATTTCGGTACGAGTAATCTATACAATTTTAGGTCTTGTTTGGTGACTTTCAGCCTCTCTGAGCTTCAAAATGCAACAGACAATTTCAGCCATGAAAATTTGATAGGAAGAGGTGGTTTTTCTGAGGTTTACAAGGGTTCTCTACAAGATGGACAACTAATAGCTGTGAAGAAAATGACCACAGGGAGCACAGATGAGAAAACAGCTGGCTTTCTATCTGAGCTAGGAATTATTGCTCATGTTGATCATCCAAATACTGCCAAACTTGTTGGATGGTGTATTGAAGGAGAAATGCACATTGTCTTTGAATTGTCTACACTGGGAAGTTTAGGACATGTTCTTCATGGTTCAGATAAAACAAAATTGGATTGGAGTAAAAGGTATAAAGTTGCTCTGGGAATTGCTGATGGTCTTCTATATCTGCATGAGAATTGTGAAAGGAGAATAATTCATAGAGATATTAAGGCAGAGAATATTCTGCTAACAGAGAATTTTGAGCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTACCAGAACAATTGACTCACCATAATATGTCCACATTTGAAGGCACATTTGGGTATTTATCTCCTGAATATTGCATGCATGGCATAGTGGATGAGAAAACTGATGTTTATTCTTTTGGTGTTCTACTTTTGGAGATCATAACTGGGCGTAAGGCTATAGATCATATGCAGAATAGTGTTGTGACATGGGCAAAACCTTTGCTTGATGCTAATAATATCAAGGACGTTGTCGATCCATCTCTTGGAGATAACTACGACCAAGGACAGATTGGATGTGTTGGTTTGACTGCATCAATGTGTGTTGAGCAGTCTCCTATCTTACGGCCTCGAATGAGTCAGGTTGTGACATTGCTAAGAGGACAAGACTCTGTCATATCTGCAAGAGCATGCAGCAAAAGAAGGTCTCTCCAAAGAACATATTCAGAAGAACTACTTGATGCACAAGAATACAACTCAACAAAATATCTAAGAGATCTCAATCGACATAAGAAGATTTTGGGTCTTGAGGTCTAA 1416 0.3969 MANEGDSHQINHGLWKHKGSFASKSKKIGSLFSCSASAQDLRNMDLEKEKDDEASPRGVLEACVKGFDAHQPPEPEPSCSNSRARSHWGKFFKLWKRRSFKRLASIPPIGVPKIPKWKSRSTRENFGTSNLYNFRSCLVTFSLSELQNATDNFSHENLIGRGGFSEVYKGSLQDGQLIAVKKMTTGSTDEKTAGFLSELGIIAHVDHPNTAKLVGWCIEGEMHIVFELSTLGSLGHVLHGSDKTKLDWSKRYKVALGIADGLLYLHENCERRIIHRDIKAENILLTENFEPQICDFGLAKWLPEQLTHHNMSTFEGTFGYLSPEYCMHGIVDEKTDVYSFGVLLLEIITGRKAIDHMQNSVVTWAKPLLDANNIKDVVDPSLGDNYDQGQIGCVGLTASMCVEQSPILRPRMSQVVTLLRGQDSVISARACSKRRSLQRTYSEELLDAQEYNSTKYLRDLNRHKKILGLEV* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1392 471 ProSitePatterns Protein kinases ATP-binding region signature. 159 182 IPR017441 GO:0005524
Mal1g1392 471 Pfam Protein tyrosine and serine/threonine kinase 156 363 IPR001245 GO:0004672|GO:0006468
Mal1g1392 471 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 31 465 - -
Mal1g1392 471 Gene3D Transferase(Phosphotransferase) domain 1 230 444 - -
Mal1g1392 471 SMART serkin_6 153 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal1g1392 471 SUPERFAMILY Protein kinase-like (PK-like) 127 419 IPR011009 -
Mal1g1392 471 PANTHER OS08G0249100 PROTEIN 31 465 - -
Mal1g1392 471 Gene3D Phosphorylase Kinase; domain 1 115 227 - -
Mal1g1392 471 ProSiteProfiles Protein kinase domain profile. 153 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal1g1392 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1392 Mal-Chr1 18005711 18008929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1392 138 471 Receptor kinase-like Gene Family AT1G53420 40.698 9.21e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Mal1g1392 PK_Tyr_Ser-Thr 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1392 - - cam:101512181 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1392 1 18005711 18008929 Mal3g4965 3 129691269 129695113 ECH
Mal1g1801 1 23591281 23593777 Mal1g1392 1 18005711 18008929 ECH
Mal4g4268 4 119850936 119854032 Mal1g1392 1 18005711 18008929 ECH
Mal1g1392 1 18005711 18008929 Mal1g1392 1 18005711 18008929 ECH
Mal3g4965 3 129691269 129695113 Mal1g1392 1 18005711 18008929 PCT