Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1372 ATGGCGCCCAAAAAAAGTCATCTGCATCAATGGAAACATCCAATCGATGCTAATTTTCCATTTGAAGCAGTATTGAATCGCTCATGGCAACCTGTGGAACTCATAAAAATTGAGTCTGGAAAAACTACTTTACATTTCATCCATACACAACAAGTTCAAAGTCCTTTGTCATCAGATATTAGGATAAGATCAAGAAAAGCTACTTCAGCTGATTGCTCCAGCTTCCTAAGACCTGGAATTGACATATCAGTGCTATCAAGCTTTCAATACTATGAAAATTCAGATCAATTTAGCACTATTCCAATGTTGATTGATGCTAGACTAAATTCCATACACAGACAACCTCATGAATCTGATCAATGTTCATGCCAATTTTATGTGAATTTCTATGATGATCAAGGTTCACTTGGTACAGAGATAAAAACTCTGAAAAAAGAGGTTAATGTAATTGGAGTAGACCAAATTTTCATCCTCCAGAGACTTCAACAAAATACCTGTAAAGGATTGTTAAGCAAAAATGAAAGTTCTGAAGTTAAGCCGTATAGGTGGGACTCATCTAAAGATTGCTCATCATTACCACAGTCTAGATTACTTTTCGGGAAATTTTTATCCGATCTTTCGTGGTTTGTTACCACATCTTTTTTAAAGAAGGCTTCGTTCATTATAAGATCGGTACAAAATAAGATTTTCTATCAAGTTATGGGAAATGATGATATTAGTAGTCCTTGTCTTATGAATGTCTTAAACTTCAAATCGAAAAGAGGATTAGTACCAATTGTTTCTGAATTCAATGTTTACCATGATTATAATGGAGAAGAAGATGCAGCGCGGCCAATGCCAAAGAACGAACTTGAAGGTTTACGACGCTCAAAACGTAGGACCATACAACCCGAACGTTACGTAGGCTGTAATGTTGAGAAGTTGGAAGTTGGTAATTTTAGAACCAGGCCATACAAGAGAGCAACTTCTGTGATAGAAGATGAAAACTCTTCTTCAGAATCAGAAGAGGATGATGGTAAGAGTGATAATATCTCTAAAGAAAAGAAGAACGGTGCTGATGTGTTGAATTATGAGCCCTGCAATGAGTCTCCATTAGCATGTGATGAAGAAGGTGATGATAATGTTTCTATGGGACATTGCTATAATTTCTGCACAGAGAAGCTTAAGAGAAGGAGATTGCATGGTATGGATGATATGGATTTCGAAACTAAATGGGAAGGGGTACATTTCAAAAAAGGTGCTCAAAAGAAAAGATATCATTCGATTTATTCGACAAACAGAAGCCTTGTTCAAGAAGAACGTGATCATGAAGGTGGTAGACCGTTAAATGATGATGTCTGCGATGAAGAAATTGATACTTACATGAATGATTTTGATAGCTTACCAACCGAAGAAGATCCAACTATTAATGAAGAAACAGAGTTGGAGCAGCAGAAAGAAAAAGCATCAAAAAGTGGTGGTGAGGAAGAAAATCCTGTTGATTTGAATGCCATGTGGGAAGAAATGGAAACAGCTATGATATCAAGTAACCTTCTTGATGGAAATGAGGGTTCAAATGTTGATGATGCAAAGAAAAAATCCAAGGATATTTGTGAACATGACTATCGATTGGATGAACAGATTGGAATATATTGCCGTAGATGCGGCTTTGTGAAAACCCATATACGAGACATTTCTGAACTCGTTATGGAACGTCCAGAACGGCACAATAAGAAGAAACAATGCAATGAAGATGATAAGGAACAAAAACCAGAGCCAAAAGTTGATGAAGATGATAAAAATGATATGCTCTCACTCCATGCTACTGATCCTGCTGAACCAATATCTGAAGAAAATGACAATGTTTGGCAATTGATTCCCGAACTCAAAGAAAAGATGCATGCTCACCAGAAAAAGGCTTTTGAGTTTCTTTGGCAAAATATTGCAGGGTCTATGGAACCATCATTGATGGAAGAAAAATCCAAAACTGGTGCTGGTTGTGTTATATCTCATGCTCCTGGAGCTGGAAAAACCTTTCTCATCATTTCTTTTCTAGTAAGTTATTTGAAATTATTTCCAGAGAAAAGACCATTAGTCCTAGCTCCAAAGACCACACTCTACACGTGGCAAAAAGAGTTCAAAAAATGGAAGATTCCAGTGCTAGTGTATCTTATCCACGGTTGTCGAACCCGGAGAGGTTTGAGAGCACCAAAATCAATGGTTCTTTCTGGTGTTCCAAAACCTTCGAACCGTGTAAATTGTGATTTGGATTCTCTTAGCAAGATCCGAAAATGGAAATCACACCCTACATTAATGAGAACAGATAATACAAAATTTGCACAAAGAAAGTATATGGCTAAAGCATTGAGAGAAAGCCCTGGAATCTTGATACTTGATGAAGGACACAATCCTAGAAGCACTAAATCAAGGCTGAGGAAATGTTTAATGAAACTACCTACAGAATTGAGAATATTGCTTTCTGGCACTTTATTTCAGAATAATTTTGGTGAATATTTCAACACGCTTTGCTTAGCTAGACCAAAATTTATTCACGAAGTTCTTCAAGAATTAGATTCCGGGTACAGGGGGATAGGAGAAATAGCGACGAAAGCGCAATACTTGCTAGAGGGGCGCGCAAGAAAACTCTTCTTGGACAACATTGAAAAGAAGATTAACTCAAATGTTGCCGAAGAAAGAATGCAAGGTTTATATGTGCTGAAAAAAATCACGAACGGTTTTGTCGATGCTTACGAAAGTGGAATCTCTTCAAATACTCTTCCTGGTTTACAACTCTATACTTTGTTCATGAATTCATCTGATCTGCAACATGAGATTATACAAAAACTGCAAATGAAAATGGTCGAGTGCGCTGGTTACCCTCTTGAGGTCGAGCTTTTGATGACACTCGGATCGATACATCCATGGTTGATCAACACAGCAAAAACATGTGATAAGTTTTTCGCTGAAGATGAGTTGAAGAGACTAGAACTAAGCAAGTTTGATCTGAAAAAAGGTTCGAAAATAAGATTTGTTTTGAGCCTTATCGCACGTGTAGTGGTGAAAAAGGAGAAGGTTATTATCTTTTCTCACAACCTTGCACCAGTGAGGTTTTTAATAGAGTTACTTGAGAAATATTTTCAGTGGATAAATGGAGAAGAGATTTTGCTACTAACCGGTGAGCTAGACTTGTTTCAAAGAGAGAAAGTAATAGAAAAATTTGAAGATCCTCACGGACGTTCGAAGATACTTCTTGCTTCAATCAATGCTTGTGCCGAAGGTATCTGTTTAACATCAGCATCAAGAGTGATTTTTCTGGACTCTGAATGGAATCCTTCAAAAACAAAGCAAGCTATTGCGCGCGCTTTTCGTCCTGGTCAGCAGAAAATGGTTTATGTGTATCAATTATTGACGACTGAATCAATGGAAGAAGGTAAGTATAAAAGAGCTGCTTGGAAAGAGTGGGTTTCTTGTATGATTTCTAGTGAAGAGCTTGTGGATGATCCTTCTAAATGGCAAACTGAGAAGATTGAAGATGATATACTTAGGGAGATGGTTGAAGAGGATAAATCTAAAGCTATCCATATGATTATGAAGAATGAAAAGACTTCAACAAGCTAA 3597 0.372 MAPKKSHLHQWKHPIDANFPFEAVLNRSWQPVELIKIESGKTTLHFIHTQQVQSPLSSDIRIRSRKATSADCSSFLRPGIDISVLSSFQYYENSDQFSTIPMLIDARLNSIHRQPHESDQCSCQFYVNFYDDQGSLGTEIKTLKKEVNVIGVDQIFILQRLQQNTCKGLLSKNESSEVKPYRWDSSKDCSSLPQSRLLFGKFLSDLSWFVTTSFLKKASFIIRSVQNKIFYQVMGNDDISSPCLMNVLNFKSKRGLVPIVSEFNVYHDYNGEEDAARPMPKNELEGLRRSKRRTIQPERYVGCNVEKLEVGNFRTRPYKRATSVIEDENSSSESEEDDGKSDNISKEKKNGADVLNYEPCNESPLACDEEGDDNVSMGHCYNFCTEKLKRRRLHGMDDMDFETKWEGVHFKKGAQKKRYHSIYSTNRSLVQEERDHEGGRPLNDDVCDEEIDTYMNDFDSLPTEEDPTINEETELEQQKEKASKSGGEEENPVDLNAMWEEMETAMISSNLLDGNEGSNVDDAKKKSKDICEHDYRLDEQIGIYCRRCGFVKTHIRDISELVMERPERHNKKKQCNEDDKEQKPEPKVDEDDKNDMLSLHATDPAEPISEENDNVWQLIPELKEKMHAHQKKAFEFLWQNIAGSMEPSLMEEKSKTGAGCVISHAPGAGKTFLIISFLVSYLKLFPEKRPLVLAPKTTLYTWQKEFKKWKIPVLVYLIHGCRTRRGLRAPKSMVLSGVPKPSNRVNCDLDSLSKIRKWKSHPTLMRTDNTKFAQRKYMAKALRESPGILILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFGEYFNTLCLARPKFIHEVLQELDSGYRGIGEIATKAQYLLEGRARKLFLDNIEKKINSNVAEERMQGLYVLKKITNGFVDAYESGISSNTLPGLQLYTLFMNSSDLQHEIIQKLQMKMVECAGYPLEVELLMTLGSIHPWLINTAKTCDKFFAEDELKRLELSKFDLKKGSKIRFVLSLIARVVVKKEKVIIFSHNLAPVRFLIELLEKYFQWINGEEILLLTGELDLFQREKVIEKFEDPHGRSKILLASINACAEGICLTSASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTESMEEGKYKRAAWKEWVSCMISSEELVDDPSKWQTEKIEDDILREMVEEDKSKAIHMIMKNEKTSTS* 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1372 1198 Gene3D - 920 1198 IPR027417 -
Mal1g1372 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 918 1183 IPR027417 -
Mal1g1372 1198 Pfam Helicase conserved C-terminal domain 1000 1117 IPR001650 -
Mal1g1372 1198 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 21 1197 - -
Mal1g1372 1198 MobiDBLite consensus disorder prediction 459 491 - -
Mal1g1372 1198 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1006 1170 IPR001650 -
Mal1g1372 1198 MobiDBLite consensus disorder prediction 336 350 - -
Mal1g1372 1198 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 21 1197 IPR044567 GO:0080188
Mal1g1372 1198 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 651 841 IPR014001 -
Mal1g1372 1198 MobiDBLite consensus disorder prediction 472 488 - -
Mal1g1372 1198 Pfam SNF2-related domain 632 855 IPR000330 GO:0005524|GO:0140658
Mal1g1372 1198 CDD SF2_C_SNF 991 1129 - -
Mal1g1372 1198 SMART helicmild6 1033 1118 IPR001650 -
Mal1g1372 1198 SMART ultradead3 622 846 IPR014001 -
Mal1g1372 1198 Gene3D - 596 863 IPR038718 -
Mal1g1372 1198 MobiDBLite consensus disorder prediction 565 595 - -
Mal1g1372 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 843 IPR027417 -
Mal1g1372 1198 MobiDBLite consensus disorder prediction 324 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1372 Mal-Chr1 17697232 17702885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1372 571 1136 RAD5 or RAD16-like Gene Family AT1G02670 23.885 2.68e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal1g1372 SNF2_N 4.4e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1372 K10875 - jre:108991882 1202.19