Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1339 ATGGCGGGTAATTGTTCGGAAGGATTAGGTGATGATTTCTTTGAGCAGATCTTAGCTGTGCCTGAGAACGGAGTTGGATATGGGAGGAATACTGGTATGGATCATGTTGGAGGAGTTTTGCAATTAGGTTCCACAACTAGAGGAGGAGGAGGAGGAGGGTTAATGCCATTGGGGTTGAATTTGGAGCAAAATCATCATGGATTTCTTAGGCATCAAGATGCAACAAGGTTTGTTGACAACGTTGTTGATGTTGAAACCAATAACAACAATAATCATCATCATCATCATCATCTTCGTCTCCATGACATGAATAATCATCATAATAACAACAACAACAATATCAATTCTTCTTCACCTTCTTCTACTCCAGGAATATCTGATAGGGATTCGATGCACATGAGGGGTTTGTTTTCAACGTTTGGACAATTGCATACTCCTACTCATGCTCAACCTGTACGCCCCATGCTTCAATCTCCACCTCCTCAACCCCAACTCCAACTCCACCTTCACCATCAACACCAACAGCACTTTCAGAGCCAGCAACCAAATCCAGCCTCTGTTACAGCCATGCCACAACCACCTGGCATCCGCCCTCGAGTGCGAGCAAGAAGAGGCCAAGCCACAGACCCCCACAGCATTGCTGAGAGGTTGCGTCGTGAAAGAATCGCTGAAAGAATGAAGGCATTACAGGAGTTAGTTCCCAGCATCAACAAGACGGACAAAGCGGCAATGCTTGATGAAATTGTTGATTATGTCAAGTTCCTTAGGCTCCAAGTTAAGGTCTTGAGCATGAGTAGACTTGGTGGAGCTGGAGCAGTTGCTCAGCTTGTAGCTGATGTTCCCGTTTCTGCAGTGGAGGGGGAGGACATAGAAGGTGGAACAAACCAGCAAGCTTGGGCAAAATGGTCAAATGATGGAACAGAACAACAAGTTGCTAAACTTATGGAAGAAGATGTTGGTGCAGCTATGCAACTTCTTCAATCCAAGGCACTTTGCATCATGCCTATATCTTTAGCATCAGCAATTTTTCGTATGCCTCAATCAGATTCATCAACAATCATCAAGCCTGAATCAAACAGCCACTCATAG 1089 0.4472 MAGNCSEGLGDDFFEQILAVPENGVGYGRNTGMDHVGGVLQLGSTTRGGGGGGLMPLGLNLEQNHHGFLRHQDATRFVDNVVDVETNNNNNHHHHHHLRLHDMNNHHNNNNNNINSSSPSSTPGISDRDSMHMRGLFSTFGQLHTPTHAQPVRPMLQSPPPQPQLQLHLHHQHQQHFQSQQPNPASVTAMPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPVSAVEGEDIEGGTNQQAWAKWSNDGTEQQVAKLMEEDVGAAMQLLQSKALCIMPISLASAIFRMPQSDSSTIIKPESNSHS* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1339 362 Gene3D - 201 263 IPR036638 GO:0046983
Mal1g1339 362 MobiDBLite consensus disorder prediction 145 164 - -
Mal1g1339 362 SMART finulus 212 261 IPR011598 GO:0046983
Mal1g1339 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 265 IPR036638 GO:0046983
Mal1g1339 362 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 349 - -
Mal1g1339 362 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 349 - -
Mal1g1339 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 255 IPR011598 GO:0046983
Mal1g1339 362 MobiDBLite consensus disorder prediction 105 127 - -
Mal1g1339 362 Pfam Helix-loop-helix DNA-binding domain 211 255 IPR011598 GO:0046983
Mal1g1339 362 MobiDBLite consensus disorder prediction 176 210 - -
Mal1g1339 362 MobiDBLite consensus disorder prediction 102 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1339 Mal-Chr1 17255132 17259553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1339 180 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 76.374 1.38e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal1g1339 HLH 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1339 - - vun:114189791 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g2413 1 32534925 32538187 Mal1g1339 1 17255132 17259553 ECH
Mal1g1339 1 17255132 17259553 Mal1g1339 1 17255132 17259553 ECH