Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1330 ATGTCTTCCACCACCGCCACTCAGCCCAAGCCCAAGAAAACCGTTGCAGCAAAGAAGACTCTCTCTCATCCAACCTACGCAGAGATGATAACTGAAGCAATTGTGAGTCTGAAAGAAAGAACCGGATCAAGCCAACACGCGATAACCAAATTCATCGAAGAGAAACACAAGGATTTATCTCCAACTTACCGTAAACTCGTTCTGCTTCAATTGAAGAAATCTGTGGCTTCTGGAAAGCTCGTGAAGGTGAAAAACTCTTTCAAACTCGCACCACCGCCGGCGAAAACTGCTCCGGTGAAAGCCGCCGCTGCTCCTGCTAAGAAGGCTAAGGCTGTCACCAAGCCGGCTGCCAAGGCTGCGACTAAGCCGAAGGCAAAGGCTGCTGTGAAGCCGAAAGCTGCCGCGAAGCCAAAAGCAGCGGCGAAGCCGAAAGCTGTTGTGAAGCCGAAAGCGAAGAGTGTTAAGGCTACGCCGGTGAAGAAGGCGGTGAAAAAAGTGGTTGCGAAGGGAGTGAAGAAGCCAAAGAGTGTGAAGACTCCGGTTAAGAAGGCTAAGAAGTGA 561 0.508 MSSTTATQPKPKKTVAAKKTLSHPTYAEMITEAIVSLKERTGSSQHAITKFIEEKHKDLSPTYRKLVLLQLKKSVASGKLVKVKNSFKLAPPPAKTAPVKAAAAPAKKAKAVTKPAAKAATKPKAKAAVKPKAAAKPKAAAKPKAVVKPKAKSVKATPVKKAVKKVVAKGVKKPKSVKTPVKKAKK* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1330 186 CDD H15 22 93 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal1g1330 186 PANTHER HISTONE H1 4 185 - -
Mal1g1330 186 Pfam linker histone H1 and H5 family 23 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal1g1330 186 SUPERFAMILY "Winged helix" DNA-binding domain 19 100 IPR036390 -
Mal1g1330 186 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 4 185 - -
Mal1g1330 186 PRINTS Histone H5 signature 36 53 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal1g1330 186 PRINTS Histone H5 signature 172 186 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal1g1330 186 PRINTS Histone H5 signature 9 30 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal1g1330 186 PRINTS Histone H5 signature 118 132 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal1g1330 186 MobiDBLite consensus disorder prediction 89 186 - -
Mal1g1330 186 Gene3D - 17 97 IPR036388 -
Mal1g1330 186 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 22 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal1g1330 186 MobiDBLite consensus disorder prediction 165 186 - -
Mal1g1330 186 MobiDBLite consensus disorder prediction 143 159 - -
Mal1g1330 186 SMART h15plus2 20 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1330 Mal-Chr1 17137975 17138621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1330 11 96 Single Myb Histone (SMH) Gene Family AT1G72740 31.395 1.26e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1330 K11275 - gmx:100810590 123.25