Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1316 ATGAAAAACAAGTTTGATTGCACTGAACTCAACCGTTACAAGCAGAAGCTTCTCGAAAAACACAGAAGCACTTGTTCATCATCCGCAATAAACCGTCTCAGGCTATGTTTAGGTCGGTGGTATAGGACCATAGGGCGAGAACTGTCTAAGCTTTATAAGCACTACGAAGGCAATATTTCTAGGCGACGTGAGACTGAACCCACGCGGCAACCTAGTACACTAAAGTATCTTTTACCAAAGATGGAGGGAATACCTGAAGATGAAGTGGTAGATGTTGAGAGTGGTTCTGGGGGTTCTGGAAACGACGATTCAGACGACGAGGGATCTTTGCCTTCTGAAATGGATGACAAATTGCATCTTGAGGAACCTCTAACGGAGGCGGAAATCGAAGACCTTATTTCTGAGCTGTTAGAAGTGGAGAGTAAGGCTGCGGAGGCCCAAGAAACTCTTGAAGAAGAGTCTCTTGCAAAAGTGGAGAGTGAAGTTCGACAAGAATTGGAGCAAACACTACAGGGGGATGACCTGGAAACTGCAGTTGCTGATGAGATGGCTGCTTTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTTCCCACTTACTGGAACAACTTGATGGGGCTGGAATTGAGCTCCCAAGCCTTTATAAGTTGATTGAAAGAGAAGCTCCAGATCGTTGTTGCACTGAAGCATGGAAAAAGCGAAATCATTGGGTTGGGTCTCAGGCAACTACTGAAATTGCTACGTCTGTTTCTGACGCAGAGAAATATCTACAAATAAACAGACCTGTTAGAAGGCGACATGGTAAATTATTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAAATTTCTCCTGAAACCCTGGAACCTGGAAAAAACGAAACTGAGGGGGATTGGGATGTGTTCAATAAAATAATTTCTGATGAGACTGGGATTGATACTTCATTTGGCAGTAAGACTTGGGCTTCTGTTTATTTGGCCAGCACTCCACAACAAGCTGCCTTGATGGGAATTGAATTTCCTGGAGTTAATGAGGTAGAGGAAATTGATGATATTGATGGCAATTCTACCGATCCATTTGTTGCAGCAGCCATTGCAAATGAAAGAGAATTAGATCTTTCCGAGGAGCAAAGTAGACAATTTAAAAAGGTCAAAGAAGAGGATGATGCAATCGTTGATAGGAAGCTTCAAATATGTTTGAAACACAGGAGGCATCAAAAGAAAAGTAAACAGCGAGAAACAAGCACACCTATCCTGTTGATGGAGAGCCATGTACAGAAGCCTTCATCTGTTGATCAATTTAACCCTGATACGAAGGAAGGAACTAGCGATGAAGGGGAAATTGTGCCTGACAATAACAAAACTGCATGTTTGCATATGGAGTCTGCTAAAATTCAAGGTTTTGATGCCAGTTTTCATCTTGACAAAGAAAAGCCTATGGGAGATGGTAATTTGGAAGATCCTCCCAACTCTTCATTGGGTGATGTTATTGAACAGAGAGGAACCAAGCGTCTAAATGATGGCGAGCTTGATGCTGATAAAAAGAAGGGGCGGACTGATATCATCAACAGCGACAATGATATACCCGTTTCTGGTTCTGGTAGCAGCGATTCAGATGATTCAGACGATTCAGACGACTCAGATGATTCAGACGATTCAGATGATTCAGAGATAAATGTTCCAATAAGCACTAAACGAAGGCGCAAAAAGAAGATTAGGAGGATACTTGATGACACTGAATTGGGAGAAGAAACAAAAAAGAAAATAGCTATTGAAAAGGAACGTCAAGAACGCCTAAAGTCCTTGAGAGTACAATTTTCTGCTTCATCGTTTGACAATAGTTCTGCTGGCTGTAATGGGAGTTCATCTGAAGGTGCAAGCGTTGAAATTCTTGGTGATGCGCTGGCAGGTTATATAGTGAATGTTGTGAGAGAAAAAGGTGAAGAAGCGGTTAGAATACCTCCAAGCATTTCAGCAAAGCTGAAAGCCCATCAGATTGCCGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTTAAGTCTGGAGATAAAGGTCTAGGGTGTATTCTAGCTCATACCATGGGCCTCGGTAAAACATTTCAGGTAATAGCTTTCTTGTACGCGGCAATGAGAAGTGTTGATTTGGGTTTAAGAACTGCACTTATAGTCACACCTGTCAATGTGCTACATAATTGGAGGACGGAGTTTATCAAATGGGCACCGTCAGAATTAAAGCGACTCAAGGTCTTTATGCTGGAAGATGTATCAAGAGATAGGAGGGCACAATTGCTCGCAAAATGGAGAGCGAAAGGTGGTGTACTCTTAATTGGCTATTCTGCATTCCGGAATTTGTCTTTTGGAAAGCATGTGAAAGACCGGGAGATGGCCAGAGAAATTTGCCATGCTTTGCAGGACGGCCCCGACATTCTTGTGTGTGACGAAGCACATATCATTAAAAATACTAAGGCTGACGTTACTCATGCATTGAAACAAGTAAAGTGCCAGAGAAGAATTGCGCTTACAGGATCACCTCTTCAAAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTACGAGAAGGTTTTCTTGGAAGCAGTCATGAGTTTAGGAACCGCTTCCAAAATCCTATAGAGAATGGCCAACACACTAATTCCACCCAGACTGATGTTAAGATTATGAACCAAAGGTCTCACATCCTCTATGAACAATTAAAAGGCTTTGTCCAAAGAATGGACATGAATGTTGTGAAGAAGGACCTACCGCCCAAAACTGTTTTCGTGATAACAGTCAAGCTTTCTCCCCTACAAAGAAAATTGTACAAGAGATTCCTTGACGTGCATGGGTTCACTAATGTCAGGGGAAATCATGAAAATTTAAGAAAGAGGAGTTTTTTTGCTGGGTATCAGGCATTGGCCCGGATATGGAACCACCCTGGGATCTTGCAATTGGCAAAAGAAGACAAGGAATGTGTTAGACCTGAAGATGCTGTTGAGAATTTCCTTGATGATATCTCAAGTGATGAAAATTCCGATTCTAATGTGCTTGCTGGAGTGAAATTGAAGTCTACAAATGATTTGCTGCAGAGAAAGGATGGTAATGGCTATTTCATAAAGGGCTGGTGGAAAGATATTCTTCATGGAAAAATTTATGAAGAGCTTGATCAAAGTGGCAAGATGGTTTTACTAATTGATATACTTACCATGAGTTCTGACGTGGGTGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACCCTAGACGTCATAGAACTTTATCTCTCAAGGCTACCACGACGTGGCAAACGAGGGAAGCTGTGGAAGAAGGGAAAAGATTGGTATAGGCTGGATGGAAGGACAGAGAGCTCAGAAAGACAGAAGCTTGTTGAAAGATTTAATGAGCCTTTGAATAAAAGGGTTAAATGCACACTTATTTCGACCAGAGCAGGATCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTAATAGTTGATGGTTCTTGGAATCCAACATATGATCTTCAGGCTATCTATCGAGCTTGGAGGTATGGGCAGAAAAAGCCCGTGTTTGCTTATCGATTGCTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTTACAAAAGAAGGGCTTGCTGCTAGAGTGGTCGATAGACAACAGGTGCATAGGACCATGTCTAAAGAAGAAATGTTGCATCTCTTTGAATTTGGTGATGACGACAGTCCGGAGACTTTAGCTGAACTAAGTAAATATGATGGGCTTACTTGCGAACAAAGTAATCCGATCTTGGCTGGGGATTCACTGAACCATACAGTACCACATTCAAATGGAAGCAGTTATTCTGATAAGTTAATGGAAAGCTTACTAGGCAAGCACCATCCCCGGTGGATTGCCAATTATCATTTACATGAATCCCTGTTACAAGAGAACGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTTTATCGCAAATCGCTGGAATGGGAAGAAGTTCAGAGAGTACCGGTTGGTGAGTCTGTGCCTGATCAAAAGCCAGAAGTGTCAAAGGCAGAAGAAGAAGAACATGAAATAGAAAAGTGGGAGCTTCCAACTAAGCTGAGAAATCGTTTCACAAAGCGGCAATGCACCAACCTTGCGCACTTGCTGACACTTAGAAGCCAGGGAATAAAATTAGGGGGCTGTACAGTCTGTGGGGAATGTGCCCGGGTGGTAAGGTGGGAAGACTTGAAGAAATAA 4287 0.4203 MKNKFDCTELNRYKQKLLEKHRSTCSSSAINRLRLCLGRWYRTIGRELSKLYKHYEGNISRRRETEPTRQPSTLKYLLPKMEGIPEDEVVDVESGSGGSGNDDSDDEGSLPSEMDDKLHLEEPLTEAEIEDLISELLEVESKAAEAQETLEEESLAKVESEVRQELEQTLQGDDLETAVADEMAAFKEEWEAVLDDLETESSHLLEQLDGAGIELPSLYKLIEREAPDRCCTEAWKKRNHWVGSQATTEIATSVSDAEKYLQINRPVRRRHGKLLEEGASGFLQKKISPETLEPGKNETEGDWDVFNKIISDETGIDTSFGSKTWASVYLASTPQQAALMGIEFPGVNEVEEIDDIDGNSTDPFVAAAIANERELDLSEEQSRQFKKVKEEDDAIVDRKLQICLKHRRHQKKSKQRETSTPILLMESHVQKPSSVDQFNPDTKEGTSDEGEIVPDNNKTACLHMESAKIQGFDASFHLDKEKPMGDGNLEDPPNSSLGDVIEQRGTKRLNDGELDADKKKGRTDIINSDNDIPVSGSGSSDSDDSDDSDDSDDSDDSDDSEINVPISTKRRRKKKIRRILDDTELGEETKKKIAIEKERQERLKSLRVQFSASSFDNSSAGCNGSSSEGASVEILGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYAAMRSVDLGLRTALIVTPVNVLHNWRTEFIKWAPSELKRLKVFMLEDVSRDRRAQLLAKWRAKGGVLLIGYSAFRNLSFGKHVKDREMAREICHALQDGPDILVCDEAHIIKNTKADVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTQTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTNVRGNHENLRKRSFFAGYQALARIWNHPGILQLAKEDKECVRPEDAVENFLDDISSDENSDSNVLAGVKLKSTNDLLQRKDGNGYFIKGWWKDILHGKIYEELDQSGKMVLLIDILTMSSDVGDKVLVFSQSIPTLDVIELYLSRLPRRGKRGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTMSKEEMLHLFEFGDDDSPETLAELSKYDGLTCEQSNPILAGDSLNHTVPHSNGSSYSDKLMESLLGKHHPRWIANYHLHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPVGESVPDQKPEVSKAEEEEHEIEKWELPTKLRNRFTKRQCTNLAHLLTLRSQGIKLGGCTVCGECARVVRWEDLKK* 1429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1316 1428 CDD SF2_C_SNF 1060 1204 - -
Mal1g1316 1428 Coils Coil 129 156 - -
Mal1g1316 1428 MobiDBLite consensus disorder prediction 406 454 - -
Mal1g1316 1428 MobiDBLite consensus disorder prediction 478 575 - -
Mal1g1316 1428 MobiDBLite consensus disorder prediction 504 526 - -
Mal1g1316 1428 Pfam SNF2-related domain 687 989 IPR000330 GO:0005524|GO:0140658
Mal1g1316 1428 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 687 870 IPR014001 -
Mal1g1316 1428 Gene3D - 638 919 IPR038718 -
Mal1g1316 1428 Coils Coil 187 207 - -
Mal1g1316 1428 MobiDBLite consensus disorder prediction 417 441 - -
Mal1g1316 1428 Gene3D - 930 1272 IPR027417 -
Mal1g1316 1428 PANTHER RAD54-LIKE 109 1426 IPR044574 GO:0016887
Mal1g1316 1428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 919 IPR027417 -
Mal1g1316 1428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 925 1258 IPR027417 -
Mal1g1316 1428 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1073 1241 IPR001650 -
Mal1g1316 1428 SMART helicmild6 1096 1193 IPR001650 -
Mal1g1316 1428 MobiDBLite consensus disorder prediction 60 114 - -
Mal1g1316 1428 SMART ultradead3 661 882 IPR014001 -
Mal1g1316 1428 Pfam Helicase conserved C-terminal domain 1069 1193 IPR001650 -
Mal1g1316 1428 PANTHER RAD54-LIKE 109 1426 - -
Mal1g1316 1428 MobiDBLite consensus disorder prediction 542 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1316 Mal-Chr1 16845173 16887077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1316 695 1246 RAD5 or RAD16-like Gene Family AT5G43530 25.000 1.09e-30 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal1g1316 SNF2_N 1.4e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1316 K10779 - egt:105955484 1634.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1316 1 16845173 16887077 Mal1g1316 1 16845173 16887077 ECH