Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1311 ATGTCTTCTTCTATTCCCTCTTCCTCGATGCAAGCTACAAATATAAACAGTGTTGGACACATGTTTTCAACCTCTGCGGAACTCCCTGATAACATCCCTTTTTCCTCTGCTTCGGAAATGCATTCTTCCATGACATTCCCTCAAGAAAATGATGTTATGTCATGGGGAACGGATCAGTTTGAAGATATTCTTCAGTTTTCTGATAATGTTCCCGTCCAGAATGATCATGTGGAATACAATGGCTCTGGCGTCATGGATGGAAATGCCAAAACAACGGATTTCAAAGAGTGGGTTGATCAGTTAATGTCAGTTGATGATTCTCTTCAGCCGAATTGGAATGAACTTCTCGGTGATAATAATATGGCAGAACCAAAATCTCAGGATGCACAAATGCCCCCTTCTCTCTTGATGCAAGAGACCCAGGTTTCACAGCAGCAGTATATGCCATCACTACCATCTAAAGAAGTTAACGATCTGCCTAATCCTTCTGTGTCCACTACATCACAATCTAAGCCTAGAATGCGTTGGACTCCGGAACTTCATGAGGCCTTTGTGGAAGCAGTGAATCAGCTTGGTGGTAGTGAGAAGGCTACACCGAAGGGTGTCTTGAACCTGATGAAAGTTGAGGGCCTTACCATCTATCACGTGAAAAGCCACCTGCAGAAATATAGAACTGCCAGATACAAACCAGAATCATCAGAAGGAATTCCAGAGAAGTTGACTTCAATCGAAGAAATGACGTCTATAGACTTAAAAACGCCTAAGGGGATTACGGAAGCATTGCGGCTGCAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAATTTACAGATTCAGATTGAGAACCAAGGGAAGCATCTACAGATGATGTTTGAGCAACAGATGAAGTCGGATGAACCTTCTGCTCCCCTATCAAGTGTCACGCTACCTTCTCCAATTGAAAATTTAGAAAACTCAAATGAGGGTCATGAAAATATTGGAATCAATGGTACCACTCCAGACAACATGCCTGAAGGAAGTTCCCAGATTACAAGCACAAAACCAAAAGGAGATGATGCTAAAGTTACTGATGAATTTGAGCTGGGAGAAGACCAATTTTCCGCACCACCCACAAAGCGAGTGAAGACTGACCAGTAG 1152 0.4288 MSSSIPSSSMQATNINSVGHMFSTSAELPDNIPFSSASEMHSSMTFPQENDVMSWGTDQFEDILQFSDNVPVQNDHVEYNGSGVMDGNAKTTDFKEWVDQLMSVDDSLQPNWNELLGDNNMAEPKSQDAQMPPSLLMQETQVSQQQYMPSLPSKEVNDLPNPSVSTTSQSKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEGIPEKLTSIEEMTSIDLKTPKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKHLQMMFEQQMKSDEPSAPLSSVTLPSPIENLENSNEGHENIGINGTTPDNMPEGSSQITSTKPKGDDAKVTDEFELGEDQFSAPPTKRVKTDQ* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1311 383 Gene3D - 170 229 - -
Mal1g1311 383 Coils Coil 258 278 - -
Mal1g1311 383 MobiDBLite consensus disorder prediction 323 383 - -
Mal1g1311 383 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 171 225 IPR006447 GO:0003677
Mal1g1311 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 168 228 IPR017930 -
Mal1g1311 383 SUPERFAMILY Homeodomain-like 169 225 IPR009057 -
Mal1g1311 383 MobiDBLite consensus disorder prediction 152 174 - -
Mal1g1311 383 Pfam MYB-CC type transfactor, LHEQLE motif 257 301 IPR025756 -
Mal1g1311 383 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 8 381 IPR044848 GO:0003700
Mal1g1311 383 MobiDBLite consensus disorder prediction 323 354 - -
Mal1g1311 383 Pfam Myb-like DNA-binding domain 173 224 IPR001005 -
Mal1g1311 383 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 8 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1311 Mal-Chr1 16780819 16783393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1311 10 299 G2-like Transcription Factor Family AT4G28610 48.867 1.50e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mal1g1311 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1311 - - mtr:MTR_1g080330 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1311 1 16780819 16783393 Mal1g1311 1 16780819 16783393 ECH
Mal3g3897 3 116949231 116954646 Mal1g1311 1 16780819 16783393 PCT
Mal3g5046 3 130538693 130541609 Mal1g1311 1 16780819 16783393 PCT